The Chromosome 7 Annotation Project

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Chromosome 7 Sequence Comparison (CRA_TCAGchr7.v1 vs. NCBI_chr7_b31)

Subject Chromosome									Query Chromosome									Alignment Details
Subject Chromosome	Subject Chromosome Start Coordinate	Subject Chromosome End Coordinate	Subject Component	Subject Component Start Coordinate	Subject Component End Coordinate	Subject Alignment Orientation	Subject Length	Subject Sequence Categorization	Query Chromosome	Query Chromosome Start Coordinate	Query Chromosome End Coordinate	Query Component	Query Component Start Coordinate	Query Component End Coordinate	Query Alignment Orientation	Query Length	Query Sequence Categorization	PatternHunter Alignment Score	PatternHunter Alignment Identity	PatternHunter Alignment Gaps
UNMATCHED	1	1120					1120	UNMATCHED	DELETION	1	1					0	DELETION
GAP	1121	51120					50000	GAP	NO_GAP	1	1					0	NO_GAP
CRA_TCAGchr7.v1:51121-96590	51121	73340	AC097647.2:1-45470\|+	1	22220	+	22220		NCBI_chr7_b31:1-22220	1	22220	AC097647.2:1-22220\|+	1	22220	+	22220		22220	22220/22220 (100%)	0/22220 (0%)
CRA_TCAGchr7.v1:51121-96590	73341	84263	AC097647.2:1-45470\|+	22221	33143	+	10923		NCBI_chr7_b31:22221-33143	22221	33143	AC097645.2:1-10923\|+	1	10923	+	10923		10923	10923/10923 (100%)	0/10923 (0%)
CRA_TCAGchr7.v1:51121-96590	84264	96590	AC097647.2:1-45470\|+	33144	45470	+	12327		NCBI_chr7_b31:33144-72470	33144	45470	AC097646.2:1-39327\|+	1	12327	+	12327		12327	12327/12327 (100%)	0/12327 (0%)
CRA_TCAGchr7.v1:96591-105103	96591	105103	AC112517.1:33129-41641\|+	33129	41641	+	8513		NCBI_chr7_b31:33144-72470	45471	53983	AC097646.2:1-39327\|+	12328	20840	+	8513		8513	8513/8513 (100%)	0/8513 (0%)
CRA_TCAGchr7.v1:105104-114912	105104	114912	AC097645.2:31764-41572\|+	31764	41572	+	9809		NCBI_chr7_b31:33144-72470	53984	63792	AC097646.2:1-39327\|+	20841	30649	+	9809		9809	9809/9809 (100%)	0/9809 (0%)
CRA_TCAGchr7.v1:114913-127224	114913	123590	AC097646.2:30650-42961\|+	30650	39327	+	8678		NCBI_chr7_b31:33144-72470	63793	72470	AC097646.2:1-39327\|+	30650	39327	+	8678		8678	8678/8678 (100%)	0/8678 (0%)
CRA_TCAGchr7.v1:123591-127224	123591	127224					3634		NCBI_chr7_b31:72471-76290	72471	76290					3820
CRA_TCAGchr7.v1:127225-157442	127225	157442	AC093686.6:3821-34038\|+	3821	34038	+	30218		NCBI_chr7_b31:72471-106508	76291	106508	AC093686.6:1-34038\|+	3821	34038	+	30218		30218	30218/30218 (100%)	0/30218 (0%)
CRA_TCAGchr7.v1:157443-170367	157443	170367	AC093666.4:1-12925\|+	1	12925	+	12925		NCBI_chr7_b31:106509-119433	106509	119433	AC093666.4:1-12925\|+	1	12925	+	12925		12925	12925/12925 (100%)	0/12925 (0%)
CRA_TCAGchr7.v1:170368-177612	170368	177612	AC093627.4:1-7245\|+	1	7245	+	7245		NCBI_chr7_b31:119434-298702	119434	126678	AC093627.4:1-179269\|+	1	7245	+	7245		7245	7245/7245 (100%)	0/7245 (0%)
CRA_TCAGchr7.v1:177613-656460	177613	217562	GA_x39G1GC42LN_4:1-478848\|+	1	39950	+	39950		NCBI_chr7_b31:119434-298702	126679	166636	AC093627.4:1-179269\|+	7246	47203	+	39958		39715	39863/39966 (99%)	24/39966 (0%)
UNMATCHED	217563	217568					6	UNMATCHED	DELETION	166619	166636					0	DELETION
CRA_TCAGchr7.v1:177613-656460	217569	249724	GA_x39G1GC42LN_4:1-478848\|+	39957	72112	+	32156		NCBI_chr7_b31:119434-298702	166619	198822	AC093627.4:1-179269\|+	47186	79389	+	32204		31679	31981/32218 (99%)	76/32218 (0%)
CRA_TCAGchr7.v1:177613-656460	248984	256073	GA_x39G1GC42LN_4:1-478848\|+	71372	78461	+	7090		NCBI_chr7_b31:119434-298702	198504	205629	AC093627.4:1-179269\|+	79071	86196	+	7126		6968	7062/7126 (99%)	36/7126 (0%)
DELETION	256068	256073					0	DELETION	UNMATCHED	205630	205721					96	UNMATCHED
CRA_TCAGchr7.v1:177613-656460	256068	263285	GA_x39G1GC42LN_4:1-478848\|+	78456	85673	+	7218		NCBI_chr7_b31:119434-298702	205722	212929	AC093627.4:1-179269\|+	86289	93496	+	7208		7099	7168/7222 (99%)	18/7222 (0%)
CRA_TCAGchr7.v1:177613-656460	263118	271468	GA_x39G1GC42LN_4:1-478848\|+	85506	93856	+	8351		NCBI_chr7_b31:119434-298702	212730	221087	AC093627.4:1-179269\|+	93297	101654	+	8358		8240	8307/8359 (99%)	9/8359 (0%)
CRA_TCAGchr7.v1:177613-656460	271343	274939	GA_x39G1GC42LN_4:1-478848\|+	93731	97327	+	3597		NCBI_chr7_b31:119434-298702	220917	224514	AC093627.4:1-179269\|+	101484	105081	+	3598		3500	3559/3603 (98%)	11/3603 (0%)
CRA_TCAGchr7.v1:177613-656460	274768	286157	GA_x39G1GC42LN_4:1-478848\|+	97156	108545	+	11390		NCBI_chr7_b31:119434-298702	224183	235572	AC093627.4:1-179269\|+	104750	116139	+	11390		11287	11353/11394 (99%)	8/11394 (0%)
CRA_TCAGchr7.v1:177613-656460	285949	305634	GA_x39G1GC42LN_4:1-478848\|+	108337	128022	+	19686		NCBI_chr7_b31:119434-298702	235488	255170	AC093627.4:1-179269\|+	116055	135737	+	19683		19549	19637/19690 (99%)	11/19690 (0%)
UNMATCHED	305635	309140					3506	UNMATCHED	DELETION	255136	255170					0	DELETION
CRA_TCAGchr7.v1:177613-656460	309141	310345	GA_x39G1GC42LN_4:1-478848\|+	131529	132733	+	1205		NCBI_chr7_b31:119434-298702	255136	256337	AC093627.4:1-179269\|+	135703	136904	+	1202		1166	1188/1205 (98%)	3/1205 (0%)
CRA_TCAGchr7.v1:177613-656460	310345	317741	GA_x39G1GC42LN_4:1-478848\|+	132733	140129	+	7397		NCBI_chr7_b31:119434-298702	256268	263694	AC093627.4:1-179269\|+	136835	144261	+	7427		7212	7331/7430 (98%)	36/7430 (0%)
CRA_TCAGchr7.v1:177613-656460	317636	322264	GA_x39G1GC42LN_4:1-478848\|+	140024	144652	+	4629		NCBI_chr7_b31:119434-298702	263505	268153	AC093627.4:1-179269\|+	144072	148720	+	4649		4531	4595/4649 (98%)	20/4649 (0%)
CRA_TCAGchr7.v1:177613-656460	321907	337748	GA_x39G1GC42LN_4:1-478848\|+	144295	160136	+	15842		NCBI_chr7_b31:119434-298702	267946	283786	AC093627.4:1-179269\|+	148513	164353	+	15841		15781	15817/15843 (99%)	3/15843 (0%)
DELETION	337634	337748					0	DELETION	UNMATCHED	283787	283812					139	UNMATCHED
CRA_TCAGchr7.v1:177613-656460	337634	352523	GA_x39G1GC42LN_4:1-478848\|+	160022	174911	+	14890		NCBI_chr7_b31:119434-298702	283813	298702	AC093627.4:1-179269\|+	164380	179269	+	14890		14854	14872/14890 (99%)	0/14890 (0%)
UNMATCHED	352524	656460					303937	UNMATCHED	DELETION	298702	298703					0	DELETION
GAP	656461	706460					50000	GAP	GAP	298703	348702					50000	GAP
UNMATCHED	706461	779996					73536	UNMATCHED	DELETION	348702	348703					0	DELETION
CRA_TCAGchr7.v1:706461-1189758	779997	921504	GA_x39G1FKSFPU_4:1-483298\|+	73537	215044	+	141508		NCBI_chr7_b31:348703-562952	348703	490197	AC099731.5:1-214250\|+	1	141495	+	141495		141250	141415/141510 (99%)	17/141510 (0%)
DELETION	921204	921504					0	DELETION	UNMATCHED	490198	493658					3760	UNMATCHED
CRA_TCAGchr7.v1:706461-1189758	921204	974929	GA_x39G1FKSFPU_4:1-483298\|+	214744	268469	+	53726		NCBI_chr7_b31:348703-562952	493659	547387	AC099731.5:1-214250\|+	144957	198685	+	53729		53457	53637/53742 (99%)	29/53742 (0%)
CRA_TCAGchr7.v1:706461-1189758	974791	976310	GA_x39G1FKSFPU_4:1-483298\|+	268331	269850	+	1520		NCBI_chr7_b31:348703-562952	547189	548708	AC099731.5:1-214250\|+	198487	200006	+	1520		1492	1506/1520 (99%)	0/1520 (0%)
DELETION	976310	976311					0	DELETION	UNMATCHED	548709	548763					55	UNMATCHED
CRA_TCAGchr7.v1:706461-1189758	976311	978322	GA_x39G1FKSFPU_4:1-483298\|+	269851	271862	+	2012		NCBI_chr7_b31:348703-562952	548764	550774	AC099731.5:1-214250\|+	200062	202072	+	2011		1961	1989/2012 (98%)	1/2012 (0%)
CRA_TCAGchr7.v1:706461-1189758	978142	980655	GA_x39G1FKSFPU_4:1-483298\|+	271682	274195	+	2514		NCBI_chr7_b31:348703-562952	550523	553030	AC099731.5:1-214250\|+	201821	204328	+	2508		2396	2473/2515 (98%)	8/2515 (0%)
CRA_TCAGchr7.v1:706461-1189758	980377	990844	GA_x39G1FKSFPU_4:1-483298\|+	273917	284384	+	10468		NCBI_chr7_b31:348703-562952	552491	562952	AC099731.5:1-214250\|+	203789	214250	+	10462		10357	10433/10469 (99%)	8/10469 (0%)
CRA_TCAGchr7.v1:706461-1189758	990845	1001962	GA_x39G1FKSFPU_4:1-483298\|+	284385	295502	+	11118		NCBI_chr7_b31:562953-757156	562953	574074	AC073957.7:1-194204\|+	1	11122	+	11122		11056	11099/11122 (99%)	4/11122 (0%)
CRA_TCAGchr7.v1:706461-1189758	1001536	1004139	GA_x39G1FKSFPU_4:1-483298\|+	295076	297679	+	2604		NCBI_chr7_b31:562953-757156	574032	576647	AC073957.7:1-194204\|+	11080	13695	+	2616		2531	2587/2618 (98%)	16/2618 (0%)
DELETION	1004137	1004139					0	DELETION	UNMATCHED	576648	576668					22	UNMATCHED
CRA_TCAGchr7.v1:706461-1189758	1004137	1020751	GA_x39G1FKSFPU_4:1-483298\|+	297677	314291	+	16615		NCBI_chr7_b31:562953-757156	576669	593294	AC073957.7:1-194204\|+	13717	30342	+	16626		16484	16575/16626 (99%)	11/16626 (0%)
CRA_TCAGchr7.v1:706461-1189758	1020572	1023043	GA_x39G1FKSFPU_4:1-483298\|+	314112	316583	+	2472		NCBI_chr7_b31:562953-757156	593285	595756	AC073957.7:1-194204\|+	30333	32804	+	2472		2464	2468/2472 (99%)	0/2472 (0%)
CRA_TCAGchr7.v1:706461-1189758	1022827	1026302	GA_x39G1FKSFPU_4:1-483298\|+	316367	319842	+	3476		NCBI_chr7_b31:562953-757156	595630	599105	AC073957.7:1-194204\|+	32678	36153	+	3476		3470	3473/3476 (99%)	0/3476 (0%)
UNMATCHED	1026303	1027393					1091	UNMATCHED	DELETION	599102	599105					0	DELETION
CRA_TCAGchr7.v1:706461-1189758	1027394	1036580	GA_x39G1FKSFPU_4:1-483298\|+	320934	330120	+	9187		NCBI_chr7_b31:562953-757156	599102	608271	AC073957.7:1-194204\|+	36150	45319	+	9170		9083	9145/9187 (99%)	17/9187 (0%)
CRA_TCAGchr7.v1:706461-1189758	1036366	1046477	GA_x39G1FKSFPU_4:1-483298\|+	329906	340017	+	10112		NCBI_chr7_b31:562953-757156	608019	618111	AC073957.7:1-194204\|+	45067	55159	+	10093		9755	9969/10133 (98%)	61/10133 (0%)
CRA_TCAGchr7.v1:706461-1189758	1045835	1049408	GA_x39G1FKSFPU_4:1-483298\|+	339375	342948	+	3574		NCBI_chr7_b31:562953-757156	617805	621370	AC073957.7:1-194204\|+	54853	58418	+	3566		3438	3514/3575 (98%)	10/3575 (0%)
DELETION	1049097	1049408					0	DELETION	UNMATCHED	621371	621517					457	UNMATCHED
CRA_TCAGchr7.v1:706461-1189758	1049097	1099621	GA_x39G1FKSFPU_4:1-483298\|+	342637	393161	+	50525		NCBI_chr7_b31:562953-757156	621518	672049	AC073957.7:1-194204\|+	58566	109097	+	50532		50356	50467/50533 (99%)	9/50533 (0%)
CRA_TCAGchr7.v1:706461-1189758	1099390	1128625	GA_x39G1FKSFPU_4:1-483298\|+	392930	422165	+	29236		NCBI_chr7_b31:562953-757156	671861	701049	AC073957.7:1-194204\|+	108909	138097	+	29189		28298	28840/29257 (98%)	89/29257 (0%)
CRA_TCAGchr7.v1:706461-1189758	1127899	1139993	GA_x39G1FKSFPU_4:1-483298\|+	421439	433533	+	12095		NCBI_chr7_b31:562953-757156	700054	712179	AC073957.7:1-194204\|+	137102	149227	+	12126		11612	11929/12146 (98%)	71/12146 (0%)
VARIATION	1139994	1140230					237	VARIATION	VARIATION	712180	712248					69	VARIATION
CRA_TCAGchr7.v1:706461-1189758	1140231	1143720	GA_x39G1FKSFPU_4:1-483298\|+	433771	437260	+	3490		NCBI_chr7_b31:562953-757156	712249	715739	AC073957.7:1-194204\|+	149297	152787	+	3491		3430	3469/3493 (99%)	5/3493 (0%)
CRA_TCAGchr7.v1:706461-1189758	1143354	1179403	GA_x39G1FKSFPU_4:1-483298\|+	436894	472943	+	36050		NCBI_chr7_b31:562953-757156	715522	751578	AC073957.7:1-194204\|+	152570	188626	+	36057		35732	35924/36066 (99%)	25/36066 (0%)
CRA_TCAGchr7.v1:706461-1189758	1178607	1184584	GA_x39G1FKSFPU_4:1-483298\|+	472147	478124	+	5978		NCBI_chr7_b31:562953-757156	751184	757156	AC073957.7:1-194204\|+	188232	194204	+	5973		5725	5875/5985 (98%)	19/5985 (0%)
CRA_TCAGchr7.v1:706461-1189758	1184585	1189758	GA_x39G1FKSFPU_4:1-483298\|+	478125	483298	+	5174		NCBI_chr7_b31:757157-861441	757157	762331	AC091729.4:1-104285\|+	1	5175	+	5175		5148	5164/5175 (99%)	1/5175 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1189759	1190479	GA_x5HB7VCL7H0_3:3805-3470178\|+	3805	4525	+	721		NCBI_chr7_b31:757157-861441	762332	763052	AC091729.4:1-104285\|+	5176	5896	+	721		713	717/721 (99%)	0/721 (0%)
CRA_TCAGchr7.v1:1190480-1200777	1190480	1200777					10298		NCBI_chr7_b31:763053-773438	763053	773438					10386
CRA_TCAGchr7.v1:1189759-4656132	1200778	1219596	GA_x5HB7VCL7H0_3:3805-3470178\|+	14824	33642	+	18819		NCBI_chr7_b31:757157-861441	773439	792266	AC091729.4:1-104285\|+	16283	35110	+	18828		18711	18784/18832 (99%)	17/18832 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1219080	1228013	GA_x5HB7VCL7H0_3:3805-3470178\|+	33126	42059	+	8934		NCBI_chr7_b31:757157-861441	791932	800845	AC091729.4:1-104285\|+	34776	43689	+	8914		8435	8754/8953 (97%)	58/8953 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1226638	1266646	GA_x5HB7VCL7H0_3:3805-3470178\|+	40684	80692	+	40009		NCBI_chr7_b31:757157-861441	800446	840469	AC091729.4:1-104285\|+	43290	83313	+	40024		39618	39871/40034 (99%)	35/40034 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1266303	1269719	GA_x5HB7VCL7H0_3:3805-3470178\|+	80349	83765	+	3417		NCBI_chr7_b31:757157-861441	840314	843727	AC091729.4:1-104285\|+	83158	86571	+	3414		3311	3376/3421 (98%)	11/3421 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1269455	1281516	GA_x5HB7VCL7H0_3:3805-3470178\|+	83501	95562	+	12062		NCBI_chr7_b31:757157-861441	843668	855718	AC091729.4:1-104285\|+	86512	98562	+	12051		11524	11846/12108 (97%)	103/12108 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1281282	1287213	GA_x5HB7VCL7H0_3:3805-3470178\|+	95328	101259	+	5932		NCBI_chr7_b31:757157-861441	855507	861441	AC091729.4:1-104285\|+	98351	104285	+	5935		5808	5888/5938 (99%)	9/5938 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1287214	1339395	GA_x5HB7VCL7H0_3:3805-3470178\|+	101260	153441	+	52182		NCBI_chr7_b31:861442-1030596	861442	913615	AC073094.11:17972-187126\|+	17972	70145	+	52174		51779	52043/52197 (99%)	38/52197 (0%)
VARIATION	1339396	1343107					3712	VARIATION	VARIATION	913616	917504					3889	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	1343108	1345591	GA_x5HB7VCL7H0_3:3805-3470178\|+	157154	159637	+	2484		NCBI_chr7_b31:861442-1030596	917505	919992	AC073094.11:17972-187126\|+	74035	76522	+	2488		2398	2453/2488 (98%)	4/2488 (0%)
VARIATION	1345592	1346181					590	VARIATION	VARIATION	919993	920881					889	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	1346182	1370949	GA_x5HB7VCL7H0_3:3805-3470178\|+	160228	184995	+	24768		NCBI_chr7_b31:861442-1030596	920882	945664	AC073094.11:17972-187126\|+	77412	102194	+	24783		24393	24617/24791 (99%)	31/24791 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1370458	1376334	GA_x5HB7VCL7H0_3:3805-3470178\|+	184504	190380	+	5877		NCBI_chr7_b31:861442-1030596	945195	951074	AC073094.11:17972-187126\|+	101725	107604	+	5880		5790	5850/5885 (99%)	13/5885 (0%)
UNMATCHED	1376335	1376786					452	UNMATCHED	DELETION	950760	951074					0	DELETION
CRA_TCAGchr7.v1:1189759-4656132	1376787	1383179	GA_x5HB7VCL7H0_3:3805-3470178\|+	190833	197225	+	6393		NCBI_chr7_b31:861442-1030596	950760	957152	AC073094.11:17972-187126\|+	107290	113682	+	6393		6305	6349/6393 (99%)	0/6393 (0%)
VARIATION	1383180	1383329					150	VARIATION	VARIATION	957153	957815					663	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	1383330	1390280	GA_x5HB7VCL7H0_3:3805-3470178\|+	197376	204326	+	6951		NCBI_chr7_b31:861442-1030596	957816	964781	AC073094.11:17972-187126\|+	114346	121311	+	6966		6654	6828/6972 (97%)	27/6972 (0%)
CRA_TCAGchr7.v1:1390281-1392802	1390281	1392802					2522		NCBI_chr7_b31:964782-967641	964782	967641					2860
CRA_TCAGchr7.v1:1189759-4656132	1392803	1412927	GA_x5HB7VCL7H0_3:3805-3470178\|+	206849	226973	+	20125		NCBI_chr7_b31:861442-1030596	967642	987777	AC073094.11:17972-187126\|+	124172	144307	+	20136		19967	20060/20138 (99%)	15/20138 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1412734	1429288	GA_x5HB7VCL7H0_3:3805-3470178\|+	226780	243334	+	16555		NCBI_chr7_b31:861442-1030596	987654	1004195	AC073094.11:17972-187126\|+	144184	160725	+	16542		16268	16427/16556 (99%)	15/16556 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1428236	1446278	GA_x5HB7VCL7H0_3:3805-3470178\|+	242282	260324	+	18043		NCBI_chr7_b31:861442-1030596	1003484	1021541	AC073094.11:17972-187126\|+	160014	178071	+	18058		17746	17939/18062 (99%)	23/18062 (0%)
VARIATION	1446279	1446353					75	VARIATION	VARIATION	1021542	1021614					73	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	1446354	1455335	GA_x5HB7VCL7H0_3:3805-3470178\|+	260400	269381	+	8982		NCBI_chr7_b31:861442-1030596	1021615	1030596	AC073094.11:17972-187126\|+	178145	187126	+	8982		8910	8946/8982 (99%)	0/8982 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1455336	1598109	GA_x5HB7VCL7H0_3:3805-3470178\|+	269382	412155	+	142774		NCBI_chr7_b31:1030597-1177592	1030597	1173357	AC102953.5:1-146996\|+	1	142761	+	142761		142525	142714/142783 (99%)	31/142783 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1598110	1602395	GA_x5HB7VCL7H0_3:3805-3470178\|+	412156	416441	+	4286		NCBI_chr7_b31:1030597-1177592	1173307	1177592	AC102953.5:1-146996\|+	142711	146996	+	4286		4280	4283/4286 (99%)	0/4286 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1602396	1673377	GA_x5HB7VCL7H0_3:3805-3470178\|+	416442	487423	+	70982		NCBI_chr7_b31:1177593-1289677	1177593	1248575	AC093734.3:1-112085\|+	1	70983	+	70983		70890	70939/70983 (99%)	1/70983 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1673135	1714463	GA_x5HB7VCL7H0_3:3805-3470178\|+	487181	528509	+	41329		NCBI_chr7_b31:1177593-1289677	1248353	1289677	AC093734.3:1-112085\|+	70761	112085	+	41325		41250	41300/41330 (99%)	6/41330 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1714464	1783853	GA_x5HB7VCL7H0_3:3805-3470178\|+	528510	597899	+	69390		NCBI_chr7_b31:1289678-1483459	1289678	1359070	AC074389.8:1-193782\|+	1	69393	+	69393		69079	69261/69398 (99%)	13/69398 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1783854	1867489	GA_x5HB7VCL7H0_3:3805-3470178\|+	597900	681535	+	83636		NCBI_chr7_b31:1289678-1483459	1359040	1442679	AC074389.8:1-193782\|+	69363	153002	+	83640		83380	83554/83653 (99%)	30/83653 (0%)
UNMATCHED	1867490	1867637					148	UNMATCHED	DELETION	1442356	1442679					0	DELETION
CRA_TCAGchr7.v1:1189759-4656132	1867638	1908757	GA_x5HB7VCL7H0_3:3805-3470178\|+	681684	722803	+	41120		NCBI_chr7_b31:1289678-1483459	1442356	1483459	AC074389.8:1-193782\|+	152679	193782	+	41104		40897	41036/41130 (99%)	36/41130 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1908758	1951751	GA_x5HB7VCL7H0_3:3805-3470178\|+	722804	765797	+	42994		NCBI_chr7_b31:1483460-1526444	1483460	1526444	AC110781.3:1-42985\|+	1	42985	+	42985		42761	42893/42995 (99%)	11/42995 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1951752	1954983	GA_x5HB7VCL7H0_3:3805-3470178\|+	765798	769029	+	3232		NCBI_chr7_b31:1526445-1589633	1526445	1529674	AC104129.4:1-63189\|+	1	3230	+	3230		3169	3203/3232 (99%)	2/3232 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1954723	1969727	GA_x5HB7VCL7H0_3:3805-3470178\|+	768769	783773	+	15005		NCBI_chr7_b31:1526445-1589633	1529544	1544524	AC104129.4:1-63189\|+	3100	18080	+	14981		14704	14871/15008 (99%)	30/15008 (0%)
VARIATION	1969728	1970724					997	VARIATION	VARIATION	1544525	1545402					878	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	1970725	1980774	GA_x5HB7VCL7H0_3:3805-3470178\|+	784771	794820	+	10050		NCBI_chr7_b31:1526445-1589633	1545403	1555452	AC104129.4:1-63189\|+	18959	29008	+	10050		9736	9915/10054 (98%)	8/10054 (0%)
CRA_TCAGchr7.v1:1189759-4656132	1979531	2013415	GA_x5HB7VCL7H0_3:3805-3470178\|+	793577	827461	+	33885		NCBI_chr7_b31:1526445-1589633	1554259	1588145	AC104129.4:1-63189\|+	27815	61701	+	33887		33612	33773/33894 (99%)	16/33894 (0%)
DELETION	2013385	2013415					0	DELETION	UNMATCHED	1588146	1589633					1517	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	2013385	2037915	GA_x5HB7VCL7H0_3:3805-3470178\|+	827431	851961	+	24531		NCBI_chr7_b31:1589634-1735336	1589634	1614143	AC069288.7:1-145703\|+	1	24510	+	24510		24275	24436/24537 (99%)	33/24537 (0%)
CRA_TCAGchr7.v1:2037916-2038350	2037916	2038350					435		NCBI_chr7_b31:1614144-1615163	1614144	1615163					1020
CRA_TCAGchr7.v1:1189759-4656132	2038351	2045318	GA_x5HB7VCL7H0_3:3805-3470178\|+	852397	859364	+	6968		NCBI_chr7_b31:1589634-1735336	1615164	1622131	AC069288.7:1-145703\|+	25531	32498	+	6968		6938	6953/6968 (99%)	0/6968 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2044813	2098333	GA_x5HB7VCL7H0_3:3805-3470178\|+	858859	912379	+	53521		NCBI_chr7_b31:1589634-1735336	1621842	1675392	AC069288.7:1-145703\|+	32209	85759	+	53551		53021	53339/53567 (99%)	62/53567 (0%)
DELETION	2097652	2098333					0	DELETION	UNMATCHED	1675393	1675550					838	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	2097652	2102478	GA_x5HB7VCL7H0_3:3805-3470178\|+	911698	916524	+	4827		NCBI_chr7_b31:1589634-1735336	1675551	1680376	AC069288.7:1-145703\|+	85918	90743	+	4826		4768	4803/4828 (99%)	3/4828 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2102244	2141868	GA_x5HB7VCL7H0_3:3805-3470178\|+	916290	955914	+	39625		NCBI_chr7_b31:1589634-1735336	1680106	1719728	AC069288.7:1-145703\|+	90473	130095	+	39623		39431	39553/39635 (99%)	22/39635 (0%)
DELETION	2141378	2141868					0	DELETION	UNMATCHED	1719729	1719897					658	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	2141378	2156809	GA_x5HB7VCL7H0_3:3805-3470178\|+	955424	970855	+	15432		NCBI_chr7_b31:1589634-1735336	1719898	1735336	AC069288.7:1-145703\|+	130265	145703	+	15439		15401	15425/15439 (99%)	7/15439 (0%)
CRA_TCAGchr7.v1:2156810-2163429	2156810	2163429					6620		NCBI_chr7_b31:1735337-1742366	1735337	1742366					7030
CRA_TCAGchr7.v1:1189759-4656132	2163430	2248410	GA_x5HB7VCL7H0_3:3805-3470178\|+	977476	1062456	+	84981		NCBI_chr7_b31:1735337-1827332	1742367	1827332	AC006433.18:1-91996\|+	7031	91996	+	84966		84813	84916/84984 (99%)	21/84984 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2248411	2266221	GA_x5HB7VCL7H0_3:3805-3470178\|+	1062457	1080267	+	17811		NCBI_chr7_b31:1827333-1925351	1827333	1845143	AC005282.4:201-98219\|-	80409	98219	+	17811		17795	17803/17811 (99%)	0/17811 (0%)
UNMATCHED	2266222	2266278					57	UNMATCHED	DELETION	1845112	1845143					0	DELETION
CRA_TCAGchr7.v1:1189759-4656132	2266279	2315668	GA_x5HB7VCL7H0_3:3805-3470178\|+	1080325	1129714	+	49390		NCBI_chr7_b31:1827333-1925351	1845112	1894504	AC005282.4:201-98219\|-	31048	80440	+	49393		49307	49369/49396 (99%)	9/49396 (0%)
DELETION	2315578	2315668					0	DELETION	UNMATCHED	1894505	1894505					90	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	2315578	2346425	GA_x5HB7VCL7H0_3:3805-3470178\|+	1129624	1160471	+	30848		NCBI_chr7_b31:1827333-1925351	1894506	1925351	AC005282.4:201-98219\|-	201	31046	+	30846		30821	30837/30848 (99%)	2/30848 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2346426	2384260	GA_x5HB7VCL7H0_3:3805-3470178\|+	1160472	1198306	+	37835		NCBI_chr7_b31:1925352-2048404	1925352	1963191	AC004971.3:201-123253\|-	85414	123253	+	37840		37591	37756/37856 (99%)	37/37856 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2383673	2421303	GA_x5HB7VCL7H0_3:3805-3470178\|+	1197719	1235349	+	37631		NCBI_chr7_b31:1925352-2048404	1962851	2000493	AC004971.3:201-123253\|-	48112	85754	+	37643		36942	37364/37686 (99%)	98/37686 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2419657	2468878	GA_x5HB7VCL7H0_3:3805-3470178\|+	1233703	1282924	+	49222		NCBI_chr7_b31:1925352-2048404	1999169	2048404	AC004971.3:201-123253\|-	201	49436	+	49236		48528	48964/49285 (99%)	112/49285 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2468879	2482908	GA_x5HB7VCL7H0_3:3805-3470178\|+	1282925	1296954	+	14030		NCBI_chr7_b31:2048405-2195801	2048405	2062426	AC004840.4:2001-149397\|-	135376	149397	+	14022		13860	13961/14032 (99%)	12/14032 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2481951	2598383	GA_x5HB7VCL7H0_3:3805-3470178\|+	1295997	1412429	+	116433		NCBI_chr7_b31:2048405-2195801	2061668	2178079	AC004840.4:2001-149397\|-	19723	136134	+	116412		116085	116301/116442 (99%)	39/116442 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2598261	2616068	GA_x5HB7VCL7H0_3:3805-3470178\|+	1412307	1430114	+	17808		NCBI_chr7_b31:2048405-2195801	2177991	2195801	AC004840.4:2001-149397\|-	2001	19811	+	17811		17754	17788/17812 (99%)	5/17812 (0%)
CRA_TCAGchr7.v1:2616069-2618737	2616069	2618737					2669		NCBI_chr7_b31:2195802-2198502	2195802	2198502					2701
CRA_TCAGchr7.v1:1189759-4656132	2618738	2705479	GA_x5HB7VCL7H0_3:3805-3470178\|+	1432784	1519525	+	86742		NCBI_chr7_b31:2195802-2285236	2198503	2285236	AC092488.3:1-89435\|+	2702	89435	+	86734		85463	86237/86876 (99%)	276/86876 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2705480	2736007	GA_x5HB7VCL7H0_3:3805-3470178\|+	1519526	1550053	+	30528		NCBI_chr7_b31:2285237-2334784	2285237	2315770	AC073462.8:201-49748\|-	19215	49748	+	30534		30280	30442/30549 (99%)	36/30549 (0%)
UNMATCHED	2736008	2736370					363	UNMATCHED	DELETION	2315740	2315770					0	DELETION
CRA_TCAGchr7.v1:1189759-4656132	2736371	2755453	GA_x5HB7VCL7H0_3:3805-3470178\|+	1550417	1569499	+	19083		NCBI_chr7_b31:2285237-2334784	2315740	2334784	AC073462.8:201-49748\|-	201	19245	+	19045		18817	18972/19087 (99%)	46/19087 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2755454	2932604	GA_x5HB7VCL7H0_3:3805-3470178\|+	1569500	1746650	+	177151		NCBI_chr7_b31:2334785-2545192	2334785	2511938	AC006028.3:201-210608\|-	33455	210608	+	177154		176486	176923/177210 (99%)	115/177210 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2917322	2965850	GA_x5HB7VCL7H0_3:3805-3470178\|+	1731368	1779896	+	48529		NCBI_chr7_b31:2334785-2545192	2496661	2545192	AC006028.3:201-210608\|-	201	48732	+	48532		48164	48396/48548 (99%)	35/48548 (0%)
CRA_TCAGchr7.v1:1189759-4656132	2965851	3061603	GA_x5HB7VCL7H0_3:3805-3470178\|+	1779897	1875649	+	95753		NCBI_chr7_b31:2545193-2640941	2545193	2640941	AC004906.3:2001-97749\|-	2001	97749	+	95749		95202	95571/95790 (99%)	78/95790 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3061604	3087448	GA_x5HB7VCL7H0_3:3805-3470178\|+	1875650	1901494	+	25845		NCBI_chr7_b31:2640942-2666788	2640942	2666788	AC092689.2:2000-27846\|-	2000	27846	+	25847		25803	25830/25847 (99%)	2/25847 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3087449	3261696	GA_x5HB7VCL7H0_3:3805-3470178\|+	1901495	2075742	+	174248		NCBI_chr7_b31:2666789-2841071	2666789	2841071	AC024028.10:1-174283\|+	1	174283	+	174283		173276	173896/174326 (99%)	121/174326 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3261697	3268774	GA_x5HB7VCL7H0_3:3805-3470178\|+	2075743	2082820	+	7078		NCBI_chr7_b31:2841072-2848157	2841072	2848155	AC091801.4:1-7086\|+	1	7084	+	7084		7010	7055/7085 (99%)	8/7085 (0%)
VARIATION	3268775	3268776					2	VARIATION	VARIATION	2848156	2848157					2	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	3268777	3342136	GA_x5HB7VCL7H0_3:3805-3470178\|+	2082823	2156182	+	73360		NCBI_chr7_b31:2848158-2995088	2848158	2921509	AC073316.6:1-146931\|+	1	73352	+	73352		72806	73156/73376 (99%)	40/73376 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3342103	3403829	GA_x5HB7VCL7H0_3:3805-3470178\|+	2156149	2217875	+	61727		NCBI_chr7_b31:2848158-2995088	2921509	2983253	AC073316.6:1-146931\|+	73352	135096	+	61745		61484	61641/61753 (99%)	34/61753 (0%)
DELETION	3403808	3403829					0	DELETION	UNMATCHED	2983254	2983259					26	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	3403808	3415642	GA_x5HB7VCL7H0_3:3805-3470178\|+	2217854	2229688	+	11835		NCBI_chr7_b31:2848158-2995088	2983260	2995088	AC073316.6:1-146931\|+	135103	146931	+	11829		11661	11777/11848 (99%)	32/11848 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3415643	3468034	GA_x5HB7VCL7H0_3:3805-3470178\|+	2229689	2282080	+	52392		NCBI_chr7_b31:2995089-3047484	2995089	3047484	AC092427.2:1-52396\|+	1	52396	+	52396		52065	52286/52417 (99%)	46/52417 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3468035	3624958	GA_x5HB7VCL7H0_3:3805-3470178\|+	2282081	2439004	+	156924		NCBI_chr7_b31:3047485-3204402	3047485	3204402	AC069286.7:201-157118\|-	201	157118	+	156918		156767	156863/156929 (99%)	16/156929 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3624959	3667463	GA_x5HB7VCL7H0_3:3805-3470178\|+	2439005	2481509	+	42505		NCBI_chr7_b31:3204403-3291249	3204403	3246904	AC079231.6:201-87047\|-	44546	87047	+	42502		42410	42468/42506 (99%)	5/42506 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3667452	3686777	GA_x5HB7VCL7H0_3:3805-3470178\|+	2481498	2500823	+	19326		NCBI_chr7_b31:3204403-3291249	3246869	3266187	AC079231.6:201-87047\|-	25263	44581	+	19319		19183	19272/19326 (99%)	7/19326 (0%)
DELETION	3686599	3686777					0	DELETION	UNMATCHED	3266188	3266324					314	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	3686599	3711534	GA_x5HB7VCL7H0_3:3805-3470178\|+	2500645	2525580	+	24936		NCBI_chr7_b31:3204403-3291249	3266325	3291249	AC079231.6:201-87047\|-	201	25125	+	24925		24765	24870/24940 (99%)	19/24940 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3711535	3804279	GA_x5HB7VCL7H0_3:3805-3470178\|+	2525581	2618325	+	92745		NCBI_chr7_b31:3291250-3384008	3291250	3384008	AC011284.3:201-92959\|-	201	92959	+	92759		92519	92662/92760 (99%)	16/92760 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3804277	3812999	GA_x5HB7VCL7H0_3:3805-3470178\|+	2618323	2627045	+	8723		NCBI_chr7_b31:3384009-3533573	3384009	3392730	AC004984.1:201-149765\|-	141044	149765	+	8722		8716	8722/8723 (99%)	1/8723 (0%)
CRA_TCAGchr7.v1:3813000-3910587	3813000	3910587					97588		NCBI_chr7_b31:3392731-3490344	3392731	3490344					97614
CRA_TCAGchr7.v1:1189759-4656132	3910588	3953823	GA_x5HB7VCL7H0_3:3805-3470178\|+	2724634	2767869	+	43236		NCBI_chr7_b31:3384009-3533573	3490345	3533573	AC004984.1:201-149765\|-	201	43429	+	43229		43100	43178/43236 (99%)	7/43236 (0%)
CRA_TCAGchr7.v1:1189759-4656132	3953824	4052532	GA_x5HB7VCL7H0_3:3805-3470178\|+	2767870	2866578	+	98709		NCBI_chr7_b31:3533574-3632308	3533574	3632308	AC004935.1:201-98935\|-	201	98935	+	98735		98200	98529/98753 (99%)	62/98753 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4052533	4067789	GA_x5HB7VCL7H0_3:3805-3470178\|+	2866579	2881835	+	15257		NCBI_chr7_b31:3632309-3758946	3632309	3647573	AC015968.4:2001-128638\|-	113374	128638	+	15265		15084	15193/15272 (99%)	22/15272 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4067052	4081167	GA_x5HB7VCL7H0_3:3805-3470178\|+	2881098	2895213	+	14116		NCBI_chr7_b31:3632309-3758946	3647324	3661445	AC015968.4:2001-128638\|-	99502	113623	+	14122		13883	14032/14141 (99%)	44/14141 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4079786	4178805	GA_x5HB7VCL7H0_3:3805-3470178\|+	2893832	2992851	+	99020		NCBI_chr7_b31:3632309-3758946	3659903	3758946	AC015968.4:2001-128638\|-	2001	101044	+	99044		98727	98935/99073 (99%)	82/99073 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4178806	4199206	GA_x5HB7VCL7H0_3:3805-3470178\|+	2992852	3013252	+	20401		NCBI_chr7_b31:3758947-3804308	3758947	3779342	AC073550.14:1-45362\|+	1	20396	+	20396		20301	20362/20408 (99%)	19/20408 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4198964	4224145	GA_x5HB7VCL7H0_3:3805-3470178\|+	3013010	3038191	+	25182		NCBI_chr7_b31:3758947-3804308	3779127	3804308	AC073550.14:1-45362\|+	20181	45362	+	25182		25166	25174/25182 (99%)	0/25182 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4224146	4233243	GA_x5HB7VCL7H0_3:3805-3470178\|+	3038192	3047289	+	9098		NCBI_chr7_b31:3804309-3958952	3804309	3813436	AC017000.5:1-154644\|+	1	9128	+	9128		8942	9040/9128 (99%)	30/9128 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4232414	4243524	GA_x5HB7VCL7H0_3:3805-3470178\|+	3046460	3057570	+	11111		NCBI_chr7_b31:3804309-3958952	3812535	3823657	AC017000.5:1-154644\|+	8227	19349	+	11123		10897	11021/11125 (99%)	16/11125 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4243212	4248219	GA_x5HB7VCL7H0_3:3805-3470178\|+	3057258	3062265	+	5008		NCBI_chr7_b31:3804309-3958952	3823451	3828458	AC017000.5:1-154644\|+	19143	24150	+	5008		4834	4921/5008 (98%)	0/5008 (0%)
DELETION	4248211	4248219					0	DELETION	UNMATCHED	3828459	3828474					23	UNMATCHED
CRA_TCAGchr7.v1:1189759-4656132	4248211	4261202	GA_x5HB7VCL7H0_3:3805-3470178\|+	3062257	3075248	+	12992		NCBI_chr7_b31:3804309-3958952	3828475	3841465	AC017000.5:1-154644\|+	24167	37157	+	12991		12850	12929/12993 (99%)	3/12993 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4261083	4321131	GA_x5HB7VCL7H0_3:3805-3470178\|+	3075129	3135177	+	60049		NCBI_chr7_b31:3804309-3958952	3841444	3901489	AC017000.5:1-154644\|+	37136	97181	+	60046		59918	59986/60049 (99%)	3/60049 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4320587	4367538	GA_x5HB7VCL7H0_3:3805-3470178\|+	3134633	3181584	+	46952		NCBI_chr7_b31:3804309-3958952	3901115	3948064	AC017000.5:1-154644\|+	96807	143756	+	46950		46640	46818/46956 (99%)	10/46956 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4366824	4378141	GA_x5HB7VCL7H0_3:3805-3470178\|+	3180870	3192187	+	11318		NCBI_chr7_b31:3804309-3958952	3947636	3958951	AC017000.5:1-154644\|+	143328	154643	+	11316		11041	11229/11327 (99%)	20/11327 (0%)
VARIATION	4378142	4378143					2	VARIATION	VARIATION	3958952	3958952					1	VARIATION
CRA_TCAGchr7.v1:1189759-4656132	4378144	4554822	GA_x5HB7VCL7H0_3:3805-3470178\|+	3192190	3368868	+	176679		NCBI_chr7_b31:3958953-4135681	3958953	4135681	AC004887.2:1-176729\|+	1	176729	+	176729		175981	176439/176757 (99%)	106/176757 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4554823	4633940	GA_x5HB7VCL7H0_3:3805-3470178\|+	3368869	3447986	+	79118		NCBI_chr7_b31:4135682-4214799	4135682	4214799	AC016898.6:1-79118\|+	1	79118	+	79118		78711	78975/79139 (99%)	42/79139 (0%)
CRA_TCAGchr7.v1:1189759-4656132	4633941	4656132	GA_x5HB7VCL7H0_3:3805-3470178\|+	3447987	3470178	+	22192		NCBI_chr7_b31:4214800-4236987	4214800	4236987	AC104060.4:1-22188\|+	1	22188	+	22188		22126	22169/22192 (99%)	4/22192 (0%)
CRA_TCAGchr7.v1:4656133-4808169	4656133	4808169	AC072054.10:1-152037\|+	1	152037	+	152037		NCBI_chr7_b31:4236988-4389024	4236988	4389024	AC072054.10:1-152037\|+	1	152037	+	152037		152037	152037/152037 (100%)	0/152037 (0%)
CRA_TCAGchr7.v1:4808170-4847992	4808170	4847992	AC092428.4:1-39823\|+	1	39823	+	39823		NCBI_chr7_b31:4389025-4428847	4389025	4428847	AC092428.4:1-39823\|+	1	39823	+	39823		39823	39823/39823 (100%)	0/39823 (0%)
CRA_TCAGchr7.v1:4847993-5008010	4847993	5008010	AC092610.1:1-160018\|+	1	160018	+	160018		NCBI_chr7_b31:4428848-4588865	4428848	4588865	AC092610.1:1-160018\|+	1	160018	+	160018		160018	160018/160018 (100%)	0/160018 (0%)
CRA_TCAGchr7.v1:5008011-5030248	5008011	5030248	AC053546.8:1-22238\|+	1	22238	+	22238		NCBI_chr7_b31:4588866-4611103	4588866	4611103	AC053546.8:1-22238\|+	1	22238	+	22238		22238	22238/22238 (100%)	0/22238 (0%)
CRA_TCAGchr7.v1:5030249-5206646	5030249	5204646	AC092032.5:1-176398\|+	1	174398	+	174398		NCBI_chr7_b31:4611104-4785501	4611104	4785501	AC092032.5:1-174398\|+	1	174398	+	174398		174398	174398/174398 (100%)	0/174398 (0%)
CRA_TCAGchr7.v1:5030249-5206646	5204647	5206646	AC092032.5:1-176398\|+	174399	176398	+	2000		NCBI_chr7_b31:4785502-4861668	4785502	4787501	AC092028.4:1-76167\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:5206647-5282813	5206647	5280813	AC092028.4:2001-78167\|+	2001	76167	+	74167		NCBI_chr7_b31:4785502-4861668	4787502	4861668	AC092028.4:1-76167\|+	2001	76167	+	74167		74167	74167/74167 (100%)	0/74167 (0%)
CRA_TCAGchr7.v1:5206647-5282813	5280814	5282813	AC092028.4:2001-78167\|+	76168	78167	+	2000		NCBI_chr7_b31:4861669-5035831	4861669	4863668	AC093376.5:1-174163\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:5282814-5456975	5282814	5454976	AC093376.5:2001-176162\|+	2001	174163	+	172163		NCBI_chr7_b31:4861669-5035831	4863669	5035831	AC093376.5:1-174163\|+	2001	174163	+	172163		172163	172163/172163 (100%)	0/172163 (0%)
CRA_TCAGchr7.v1:5282814-5456975	5454977	5456975	AC093376.5:2001-176162\|+	174164	176162	+	1999		NCBI_chr7_b31:5035832-5105014	5035832	5037831	AC093620.3:1-69183\|+	1	2000	+	2000		1991	1998/2000 (99%)	1/2000 (0%)
CRA_TCAGchr7.v1:5456976-5526158	5456976	5524158	AC093620.3:2001-71183\|+	2001	69183	+	67183		NCBI_chr7_b31:5035832-5105014	5037832	5105014	AC093620.3:1-69183\|+	2001	69183	+	67183		67183	67183/67183 (100%)	0/67183 (0%)
CRA_TCAGchr7.v1:5456976-5526158	5524159	5526158	AC093620.3:2001-71183\|+	69184	71183	+	2000		NCBI_chr7_b31:5105015-5188146	5105015	5107014	AC092171.4:1-83132\|+	1	2000	+	2000		1998	1999/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:5526159-5609290	5526159	5607290	AC092171.4:2001-85132\|+	2001	83132	+	81132		NCBI_chr7_b31:5105015-5188146	5107015	5188146	AC092171.4:1-83132\|+	2001	83132	+	81132		81132	81132/81132 (100%)	0/81132 (0%)
CRA_TCAGchr7.v1:5526159-5609290	5607291	5609290	AC092171.4:2001-85132\|+	83133	85132	+	2000		NCBI_chr7_b31:5188147-5382562	5188147	5190155	AC006483.3:2001-196416\|-	194408	196416	+	2009		1980	1997/2009 (99%)	9/2009 (0%)
CRA_TCAGchr7.v1:5609291-5803697	5609291	5801697	AC006483.3:1-194407\|-	2001	194407	+	192407		NCBI_chr7_b31:5188147-5382562	5190156	5382562	AC006483.3:2001-196416\|-	2001	194407	+	192407		192407	192407/192407 (100%)	0/192407 (0%)
CRA_TCAGchr7.v1:5609291-5803697	5801698	5803697	AC006483.3:1-194407\|-	1	2000	+	2000		NCBI_chr7_b31:5382563-5522925	5382563	5384562	AC008167.5:2001-142363\|-	140364	142363	+	2000		1996	1998/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:5803698-5944060	5803698	5942060	AC008167.5:1-140363\|-	2001	140363	+	138363		NCBI_chr7_b31:5382563-5522925	5384563	5522925	AC008167.5:2001-142363\|-	2001	140363	+	138363		138363	138363/138363 (100%)	0/138363 (0%)
CRA_TCAGchr7.v1:5803698-5944060	5942061	5944060	AC008167.5:1-140363\|-	1	2000	+	2000		NCBI_chr7_b31:5522926-5647546	5522926	5524925	AC004983.3:201-124821\|-	122822	124821	+	2000		1994	1997/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:5944061-6066881	5944061	6066681	AC004983.2:2001-124821\|+	2001	124621	+	122621		NCBI_chr7_b31:5522926-5647546	5524926	5647546	AC004983.3:201-124821\|-	201	122821	+	122621		122621	122621/122621 (100%)	0/122621 (0%)
CRA_TCAGchr7.v1:6066682-6066881	6066682	6066881					200		NCBI_chr7_b31:5647547-5647746	5647547	5647746					200
CRA_TCAGchr7.v1:6066882-6146691	6066882	6146491	AC005995.3:1-79810\|-	201	79810	+	79610		NCBI_chr7_b31:5647547-5727356	5647747	5727356	AC005995.3:201-80010\|-	201	79810	+	79610		79610	79610/79610 (100%)	0/79610 (0%)
CRA_TCAGchr7.v1:6066882-6146691	6146492	6146691	AC005995.3:1-79810\|-	1	200	+	200		NCBI_chr7_b31:5727357-5878283	5727357	5727556	AC004895.2:2001-152927\|-	152728	152927	+	200		200	200/200 (100%)	0/200 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6146692	6297430	GA_x5HB7VCL73F_3:56781-716446\|+	56781	207519	+	150739		NCBI_chr7_b31:5727357-5878283	5727557	5878283	AC004895.2:2001-152927\|-	2001	152727	+	150727		150473	150656/150754 (99%)	42/150754 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6297431	6330979	GA_x5HB7VCL73F_3:56781-716446\|+	207520	241068	+	33549		NCBI_chr7_b31:5878284-5911833	5878284	5911833	AC092439.4:1-33550\|+	1	33550	+	33550		33537	33546/33550 (99%)	1/33550 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6330980	6508297	GA_x5HB7VCL73F_3:56781-716446\|+	241069	418386	+	177318		NCBI_chr7_b31:5911834-6124460	5911834	6089153	AC009412.6:1-212627\|+	1	177320	+	177320		176923	177202/177341 (99%)	44/177341 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6508248	6510959	GA_x5HB7VCL73F_3:56781-716446\|+	418337	421048	+	2712		NCBI_chr7_b31:5911834-6124460	6089148	6091859	AC009412.6:1-212627\|+	177315	180026	+	2712		2708	2710/2712 (99%)	0/2712 (0%)
DELETION	6510947	6510959					0	DELETION	UNMATCHED	6091860	6091873					25	UNMATCHED
CRA_TCAGchr7.v1:6146692-6806357	6510947	6524562	GA_x5HB7VCL73F_3:56781-716446\|+	421036	434651	+	13616		NCBI_chr7_b31:5911834-6124460	6091874	6105485	AC009412.6:1-212627\|+	180041	193652	+	13612		13545	13588/13616 (99%)	4/13616 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6524388	6543378	GA_x5HB7VCL73F_3:56781-716446\|+	434477	453467	+	18991		NCBI_chr7_b31:5911834-6124460	6105473	6124460	AC009412.6:1-212627\|+	193640	212627	+	18988		18923	18965/18992 (99%)	5/18992 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6543379	6561379	GA_x5HB7VCL73F_3:56781-716446\|+	453468	471468	+	18001		NCBI_chr7_b31:6124461-6259534	6124461	6142459	AC072052.6:1-135074\|+	1	17999	+	17999		17884	17968/18007 (99%)	14/18007 (0%)
VARIATION	6561380	6561926					547	VARIATION	VARIATION	6142460	6142677					218	VARIATION
CRA_TCAGchr7.v1:6146692-6806357	6561927	6585253	GA_x5HB7VCL73F_3:56781-716446\|+	472016	495342	+	23327		NCBI_chr7_b31:6124461-6259534	6142678	6166000	AC072052.6:1-135074\|+	18218	41540	+	23323		23202	23279/23331 (99%)	12/23331 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6585226	6678771	GA_x5HB7VCL73F_3:56781-716446\|+	495315	588860	+	93546		NCBI_chr7_b31:6124461-6259534	6165997	6259534	AC072052.6:1-135074\|+	41537	135074	+	93538		93101	93404/93577 (99%)	70/93577 (0%)
CRA_TCAGchr7.v1:6146692-6806357	6678772	6683284	GA_x5HB7VCL73F_3:56781-716446\|+	588861	593373	+	4513		NCBI_chr7_b31:6259535-6298763	6259535	6264051	AC079742.6:1-39229\|+	1	4517	+	4517		4388	4455/4517 (98%)	4/4517 (0%)
UNMATCHED	6683285	6683587					303	UNMATCHED	DELETION	6263912	6264051					0	DELETION
CRA_TCAGchr7.v1:6146692-6806357	6683588	6693610	GA_x5HB7VCL73F_3:56781-716446\|+	593677	603699	+	10023		NCBI_chr7_b31:6259535-6298763	6263912	6273925	AC079742.6:1-39229\|+	4378	14391	+	10014		9963	9998/10023 (99%)	9/10023 (0%)
VARIATION	6693611	6693961					351	VARIATION	VARIATION	6273926	6274104					179	VARIATION
CRA_TCAGchr7.v1:6146692-6806357	6693962	6717203	GA_x5HB7VCL73F_3:56781-716446\|+	604051	627292	+	23242		NCBI_chr7_b31:6259535-6298763	6274105	6297359	AC079742.6:1-39229\|+	14571	37825	+	23255		23015	23173/23261 (99%)	25/23261 (0%)
VARIATION	6717204	6719707					2504	VARIATION	VARIATION	6297360	6299848					2489	VARIATION
CRA_TCAGchr7.v1:6146692-6806357	6719708	6768132	GA_x5HB7VCL73F_3:56781-716446\|+	629797	678221	+	48425		NCBI_chr7_b31:6298764-6470730	6299849	6348295	AC073343.6:1-171967\|+	1086	49532	+	48447		48234	48378/48452 (99%)	32/48452 (0%)
VARIATION	6768133	6768166					34	VARIATION	VARIATION	6348296	6348333					38	VARIATION
CRA_TCAGchr7.v1:6146692-6806357	6768167	6806357	GA_x5HB7VCL73F_3:56781-716446\|+	678256	716446	+	38191		NCBI_chr7_b31:6298764-6470730	6348334	6386512	AC073343.6:1-171967\|+	49571	87749	+	38179		38075	38151/38192 (99%)	14/38192 (0%)
CRA_TCAGchr7.v1:6806358-6892575	6806358	6890575	AC073343.6:87750-173967\|+	87750	171967	+	84218		NCBI_chr7_b31:6298764-6470730	6386513	6470730	AC073343.6:1-171967\|+	87750	171967	+	84218		84218	84218/84218 (100%)	0/84218 (0%)
CRA_TCAGchr7.v1:6890576-6892575	6890576	6892575					2000		NCBI_chr7_b31:6470731-6472730	6470731	6472730					2000
CRA_TCAGchr7.v1:6892576-6950002	6892576	6948002	AC079882.6:2001-59427\|+	2001	57427	+	55427		NCBI_chr7_b31:6470731-6528157	6472731	6528157	AC079882.6:1-57427\|+	2001	57427	+	55427		55427	55427/55427 (100%)	0/55427 (0%)
CRA_TCAGchr7.v1:6892576-6950002	6948003	6950002	AC079882.6:2001-59427\|+	57428	59427	+	2000		NCBI_chr7_b31:6528158-6710669	6528158	6530157	AC079804.5:1-182512\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:6950003-7102375	6950003	7102375	AC079804.5:2001-154373\|+	2001	154373	+	152373		NCBI_chr7_b31:6528158-6710669	6530158	6682530	AC079804.5:1-182512\|+	2001	154373	+	152373		152373	152373/152373 (100%)	0/152373 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7102376	7130514	GA_x5HB7VCL79P_4:1-22697252\|-	22669114	22697252	+	28139		NCBI_chr7_b31:6528158-6710669	6682531	6710669	AC079804.5:1-182512\|+	154374	182512	+	28139		28014	28088/28142 (99%)	6/28142 (0%)
UNMATCHED	7130515	7130516					2	UNMATCHED	DELETION	6710669	6710670					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	7130517	7172613	GA_x5HB7VCL79P_4:1-22697252\|-	22627015	22669111	+	42097		NCBI_chr7_b31:6710670-6763171	6710670	6752773	AC092104.5:1-52502\|+	1	42104	+	42104		41649	41910/42111 (99%)	21/42111 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7171853	7183156	GA_x5HB7VCL79P_4:1-22697252\|-	22616472	22627775	+	11304		NCBI_chr7_b31:6710670-6763171	6751868	6763171	AC092104.5:1-52502\|+	41199	52502	+	11304		11136	11238/11310 (99%)	12/11310 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7183157	7274255	GA_x5HB7VCL79P_4:1-22697252\|-	22525373	22616471	+	91099		NCBI_chr7_b31:6763172-6854282	6763172	6854282	AC011230.3:1-91111\|+	1	91111	+	91111		90755	90976/91127 (99%)	44/91127 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7274256	7389986	GA_x5HB7VCL79P_4:1-22697252\|-	22409642	22525372	+	115731		NCBI_chr7_b31:6854283-6970036	6854283	6970036	AC005532.2:1-115754\|+	1	115754	+	115754		115364	115600/115766 (99%)	47/115766 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7389987	7405205	GA_x5HB7VCL79P_4:1-22697252\|-	22394423	22409641	+	15219		NCBI_chr7_b31:6970037-6985258	6970037	6985258	AC079448.5:1-15222\|+	1	15222	+	15222		15134	15194/15224 (99%)	7/15224 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7405206	7472403	GA_x5HB7VCL79P_4:1-22697252\|-	22327225	22394422	+	67198		NCBI_chr7_b31:6985259-7138264	6985259	7052407	AC006356.3:1-153006\|+	1	67149	+	67149		66632	66976/67215 (99%)	83/67215 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7469222	7558278	GA_x5HB7VCL79P_4:1-22697252\|-	22241350	22330406	+	89057		NCBI_chr7_b31:6985259-7138264	7049226	7138264	AC006356.3:1-153006\|+	63968	153006	+	89039		88808	88969/89065 (99%)	34/89065 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7558279	7590713	GA_x5HB7VCL79P_4:1-22697252\|-	22208915	22241349	+	32435		NCBI_chr7_b31:7138265-7170697	7138265	7170697	AC009402.3:1-32433\|+	1	32433	+	32433		32413	32429/32435 (99%)	2/32435 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7590714	7720551	GA_x5HB7VCL79P_4:1-22697252\|-	22079077	22208914	+	129838		NCBI_chr7_b31:7170698-7300524	7170698	7300524	AC004982.1:1-129827\|+	1	129827	+	129827		129243	129606/129874 (99%)	83/129874 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7720552	7723277	GA_x5HB7VCL79P_4:1-22697252\|-	22076351	22079076	+	2726		NCBI_chr7_b31:7300525-7375400	7300525	7303242	AC004948.2:1-74876\|+	1	2718	+	2718		2686	2711/2726 (99%)	8/2726 (0%)
CRA_TCAGchr7.v1:7723278-7741712	7723278	7741712					18435		NCBI_chr7_b31:7303243-7321661	7303243	7321661					18419
CRA_TCAGchr7.v1:7102376-29799627	7741713	7782708	GA_x5HB7VCL79P_4:1-22697252\|-	22016920	22057915	+	40996		NCBI_chr7_b31:7300525-7375400	7321662	7362690	AC004948.2:1-74876\|+	21138	62166	+	41029		40780	40936/41032 (99%)	39/41032 (0%)
DELETION	7782441	7782708					0	DELETION	UNMATCHED	7362691	7363456					1032	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	7782441	7794379	GA_x5HB7VCL79P_4:1-22697252\|-	22005249	22017187	+	11939		NCBI_chr7_b31:7300525-7375400	7363457	7375400	AC004948.2:1-74876\|+	62933	74876	+	11944		11869	11909/11944 (99%)	5/11944 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7794380	7903496	GA_x5HB7VCL79P_4:1-22697252\|-	21896132	22005248	+	109117		NCBI_chr7_b31:7375401-7484543	7375401	7484539	AC007161.1:1-109143\|+	1	109139	+	109139		108770	109004/109148 (99%)	40/109148 (0%)
VARIATION	7903497	7903501					5	VARIATION	VARIATION	7484540	7484543					4	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	7903502	7942989	GA_x5HB7VCL79P_4:1-22697252\|-	21856639	21896126	+	39488		NCBI_chr7_b31:7484544-7524037	7484544	7524037	AC009473.3:1-39494\|+	1	39494	+	39494		39222	39390/39503 (99%)	24/39503 (0%)
CRA_TCAGchr7.v1:7102376-29799627	7942990	7943472	GA_x5HB7VCL79P_4:1-22697252\|-	21856156	21856638	+	483		NCBI_chr7_b31:7524038-7625605	7524038	7524520	AC006465.2:1-101568\|+	1	483	+	483		483	483/483 (100%)	0/483 (0%)
UNMATCHED	7943473	7943481					9	UNMATCHED	DELETION	7524507	7524520					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	7943482	8044598	GA_x5HB7VCL79P_4:1-22697252\|-	21755030	21856146	+	101117		NCBI_chr7_b31:7524038-7625605	7524507	7625605	AC006465.2:1-101568\|+	470	101568	+	101099		100740	100966/101132 (99%)	48/101132 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8044599	8115431	GA_x5HB7VCL79P_4:1-22697252\|-	21684197	21755029	+	70833		NCBI_chr7_b31:7625606-7803766	7625606	7696445	AC006042.2:1-178161\|+	1	70840	+	70840		70595	70759/70858 (99%)	43/70858 (0%)
CRA_TCAGchr7.v1:8115432-8214301	8115432	8214301					98870		NCBI_chr7_b31:7696446-7795318	7696446	7795318					98873
CRA_TCAGchr7.v1:7102376-29799627	8214302	8222741	GA_x5HB7VCL79P_4:1-22697252\|-	21576887	21585326	+	8440		NCBI_chr7_b31:7625606-7803766	7795319	7803766	AC006042.2:1-178161\|+	169714	178161	+	8448		8363	8415/8452 (99%)	16/8452 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8222742	8375040	GA_x5HB7VCL79P_4:1-22697252\|-	21424588	21576886	+	152299		NCBI_chr7_b31:7803767-7956089	7803767	7956089	AC007009.2:1-152323\|+	1	152323	+	152323		151674	152087/152355 (99%)	88/152355 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8375041	8435643	GA_x5HB7VCL79P_4:1-22697252\|-	21363985	21424587	+	60603		NCBI_chr7_b31:7956090-8064078	7956090	8016684	AC007128.2:1-107989\|+	1	60595	+	60595		60383	60525/60607 (99%)	16/60607 (0%)
UNMATCHED	8435644	8438126					2483	UNMATCHED	DELETION	8016683	8016684					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	8438127	8485508	GA_x5HB7VCL79P_4:1-22697252\|-	21314120	21361501	+	47382		NCBI_chr7_b31:7956090-8064078	8016683	8064078	AC007128.2:1-107989\|+	60594	107989	+	47396		47193	47312/47401 (99%)	24/47401 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8485509	8497448	GA_x5HB7VCL79P_4:1-22697252\|-	21302180	21314119	+	11940		NCBI_chr7_b31:8064079-8197949	8064079	8076021	AC004861.1:1-133871\|+	1	11943	+	11943		11872	11915/11943 (99%)	3/11943 (0%)
DELETION	8497435	8497448					0	DELETION	UNMATCHED	8076022	8076028					19	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	8497435	8619351	GA_x5HB7VCL79P_4:1-22697252\|-	21180277	21302193	+	121917		NCBI_chr7_b31:8064079-8197949	8076029	8197949	AC004861.1:1-133871\|+	11951	133871	+	121921		121670	121825/121930 (99%)	22/121930 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8619352	8747373	GA_x5HB7VCL79P_4:1-22697252\|-	21052255	21180276	+	128022		NCBI_chr7_b31:8197950-8325969	8197950	8325969	AC004457.1:1-128020\|+	1	128020	+	128020		127992	128012/128022 (99%)	2/128022 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8747374	8760828	GA_x5HB7VCL79P_4:1-22697252\|-	21038800	21052254	+	13455		NCBI_chr7_b31:8325970-8446934	8325970	8339427	AC004613.1:1-120965\|+	1	13458	+	13458		13215	13362/13464 (99%)	15/13464 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8760777	8764372	GA_x5HB7VCL79P_4:1-22697252\|-	21035256	21038851	+	3596		NCBI_chr7_b31:8325970-8446934	8339398	8343002	AC004613.1:1-120965\|+	13429	17033	+	3605		3485	3554/3608 (98%)	15/3608 (0%)
DELETION	8764363	8764372					0	DELETION	UNMATCHED	8343003	8343210					216	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	8764363	8868077	GA_x5HB7VCL79P_4:1-22697252\|-	20931551	21035265	+	103715		NCBI_chr7_b31:8325970-8446934	8343211	8446934	AC004613.1:1-120965\|+	17242	120965	+	103724		103312	103567/103737 (99%)	35/103737 (0%)
CRA_TCAGchr7.v1:7102376-29799627	8868078	8995128	GA_x5HB7VCL79P_4:1-22697252\|-	20804500	20931550	+	127051		NCBI_chr7_b31:8446935-8574004	8446935	8574003	AC004740.1:1-127070\|+	1	127069	+	127069		126884	126995/127071 (99%)	22/127071 (0%)
VARIATION	8995129	8995154					26	VARIATION	VARIATION	8574004	8574004					1	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	8995155	9049513	GA_x5HB7VCL79P_4:1-22697252\|-	20750115	20804473	+	54359		NCBI_chr7_b31:8574005-8628358	8574005	8628358	AC009500.2:1-54354\|+	1	54354	+	54354		54154	54275/54366 (99%)	19/54366 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9049514	9066555	GA_x5HB7VCL79P_4:1-22697252\|-	20733073	20750114	+	17042		NCBI_chr7_b31:8628359-8718020	8628359	8645400	AC007164.3:1-89662\|+	1	17042	+	17042		16883	16980/17047 (99%)	10/17047 (0%)
DELETION	9066553	9066555					0	DELETION	UNMATCHED	8645401	8645417					18	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	9066553	9139168	GA_x5HB7VCL79P_4:1-22697252\|-	20660460	20733075	+	72616		NCBI_chr7_b31:8628359-8718020	8645418	8718020	AC007164.3:1-89662\|+	17060	89662	+	72603		72234	72466/72628 (99%)	37/72628 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9139169	9156483	GA_x5HB7VCL79P_4:1-22697252\|-	20643145	20660459	+	17315		NCBI_chr7_b31:8718021-8876361	8718021	8735328	AC004852.2:1-158341\|+	1	17308	+	17308		17223	17287/17321 (99%)	19/17321 (0%)
VARIATION	9156484	9163418					6935	VARIATION	VARIATION	8735329	8735329					1	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	9163419	9260681	GA_x5HB7VCL79P_4:1-22697252\|-	20538947	20636209	+	97263		NCBI_chr7_b31:8718021-8876361	8735330	8832558	AC004852.2:1-158341\|+	17310	114538	+	97229		96854	97098/97277 (99%)	62/97277 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9256067	9304489	GA_x5HB7VCL79P_4:1-22697252\|-	20495139	20543561	+	48423		NCBI_chr7_b31:8718021-8876361	8827944	8876361	AC004852.2:1-158341\|+	109924	158341	+	48418		48324	48386/48423 (99%)	5/48423 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9304490	9315349	GA_x5HB7VCL79P_4:1-22697252\|-	20484279	20495138	+	10860		NCBI_chr7_b31:8876362-9008052	8876362	8887221	AC074347.8:1-131691\|+	1	10860	+	10860		10860	10860/10860 (100%)	0/10860 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9315307	9426515	GA_x5HB7VCL79P_4:1-22697252\|-	20373113	20484321	+	111209		NCBI_chr7_b31:8876362-9008052	8887208	8998453	AC074347.8:1-131691\|+	10847	122092	+	111246		110502	110977/111277 (99%)	99/111277 (0%)
VARIATION	9426516	9426743					228	VARIATION	VARIATION	8998454	8998691					238	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	9426744	9436122	GA_x5HB7VCL79P_4:1-22697252\|-	20363506	20372884	+	9379		NCBI_chr7_b31:8876362-9008052	8998692	9008052	AC074347.8:1-131691\|+	122331	131691	+	9361		9289	9342/9380 (99%)	20/9380 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9436123	9440600	GA_x5HB7VCL79P_4:1-22697252\|-	20359028	20363505	+	4478		NCBI_chr7_b31:9008053-9012529	9008053	9012529	AC092464.2:1-4477\|+	1	4477	+	4477		4451	4467/4478 (99%)	1/4478 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9440601	9444189	GA_x5HB7VCL79P_4:1-22697252\|-	20355439	20359027	+	3589		NCBI_chr7_b31:9012530-9127219	9012530	9016120	AC079996.5:1-114690\|+	1	3591	+	3591		3569	3585/3591 (99%)	2/3591 (0%)
VARIATION	9444190	9444552					363	VARIATION	VARIATION	9016121	9016272					152	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	9444553	9457412	GA_x5HB7VCL79P_4:1-22697252\|-	20342216	20355075	+	12860		NCBI_chr7_b31:9012530-9127219	9016273	9029129	AC079996.5:1-114690\|+	3744	16600	+	12857		12547	12720/12868 (98%)	19/12868 (0%)
UNMATCHED	9457413	9457632					220	UNMATCHED	DELETION	9028743	9029129					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	9457633	9512270	GA_x5HB7VCL79P_4:1-22697252\|-	20287358	20341995	+	54638		NCBI_chr7_b31:9012530-9127219	9028743	9083383	AC079996.5:1-114690\|+	16214	70854	+	54641		54419	54546/54643 (99%)	7/54643 (0%)
VARIATION	9512271	9518342					6072	VARIATION	VARIATION	9083384	9089540					6157	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	9518343	9556021	GA_x5HB7VCL79P_4:1-22697252\|-	20243607	20281285	+	37679		NCBI_chr7_b31:9012530-9127219	9089541	9127219	AC079996.5:1-114690\|+	77012	114690	+	37679		37610	37650/37680 (99%)	2/37680 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9556022	9617115	GA_x5HB7VCL79P_4:1-22697252\|-	20182513	20243606	+	61094		NCBI_chr7_b31:9127220-9293566	9127220	9188322	AC079756.4:1-166347\|+	1	61103	+	61103		60860	61004/61108 (99%)	19/61108 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9617061	9703290	GA_x5HB7VCL79P_4:1-22697252\|-	20096338	20182567	+	86230		NCBI_chr7_b31:9127220-9293566	9188278	9274499	AC079756.4:1-166347\|+	61059	147280	+	86222		85845	86092/86249 (99%)	46/86249 (0%)
DELETION	9703274	9703290					0	DELETION	UNMATCHED	9274500	9274503					19	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	9703274	9707798	GA_x5HB7VCL79P_4:1-22697252\|-	20091830	20096354	+	4525		NCBI_chr7_b31:9127220-9293566	9274504	9279030	AC079756.4:1-166347\|+	147285	151811	+	4527		4434	4487/4530 (99%)	8/4530 (0%)
DELETION	9707775	9707798					0	DELETION	UNMATCHED	9279031	9280349					1341	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	9707775	9720992	GA_x5HB7VCL79P_4:1-22697252\|-	20078636	20091853	+	13218		NCBI_chr7_b31:9127220-9293566	9280350	9293566	AC079756.4:1-166347\|+	153131	166347	+	13217		13138	13189/13225 (99%)	15/13225 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9720993	9785240	GA_x5HB7VCL79P_4:1-22697252\|-	20014388	20078635	+	64248		NCBI_chr7_b31:9293567-9357795	9293567	9357795	AC096553.1:1-64229\|+	1	64229	+	64229		63945	64133/64256 (99%)	35/64256 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9785241	9796096	GA_x5HB7VCL79P_4:1-22697252\|-	20003532	20014387	+	10856		NCBI_chr7_b31:9357796-9368651	9357796	9368651	AC096580.1:1-10856\|+	1	10856	+	10856		10822	10839/10856 (99%)	0/10856 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9796097	9798892	GA_x5HB7VCL79P_4:1-22697252\|-	20000736	20003531	+	2796		NCBI_chr7_b31:9368652-9482137	9368652	9371447	AC060834.8:1-113486\|+	1	2796	+	2796		2786	2791/2796 (99%)	0/2796 (0%)
DELETION	9798884	9798892					0	DELETION	UNMATCHED	9371448	9371463					23	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	9798884	9880505	GA_x5HB7VCL79P_4:1-22697252\|-	19919123	20000744	+	81622		NCBI_chr7_b31:9368652-9482137	9371464	9453079	AC060834.8:1-113486\|+	2813	84428	+	81616		81197	81452/81652 (99%)	66/81652 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9876361	9909559	GA_x5HB7VCL79P_4:1-22697252\|-	19890069	19923267	+	33199		NCBI_chr7_b31:9368652-9482137	9448935	9482137	AC060834.8:1-113486\|+	80284	113486	+	33203		33132	33179/33206 (99%)	10/33206 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9909560	9977345	GA_x5HB7VCL79P_4:1-22697252\|-	19822283	19890068	+	67786		NCBI_chr7_b31:9482138-9549928	9482138	9549928	AC006363.3:1-67791\|+	1	67791	+	67791		67511	67692/67808 (99%)	39/67808 (0%)
CRA_TCAGchr7.v1:7102376-29799627	9977346	10030151	GA_x5HB7VCL79P_4:1-22697252\|-	19769477	19822282	+	52806		NCBI_chr7_b31:9549929-9602737	9549929	9602737	AC010991.4:1-52809\|+	1	52809	+	52809		52639	52737/52810 (99%)	5/52810 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10030152	10113327	GA_x5HB7VCL79P_4:1-22697252\|-	19686301	19769476	+	83176		NCBI_chr7_b31:9602738-9742486	9602738	9685932	AC004936.2:201-139949\|-	56755	139949	+	83195		82611	82985/83224 (99%)	77/83224 (0%)
VARIATION	10113328	10113328					1	VARIATION	VARIATION	9685933	9685955					23	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	10113329	10169849	GA_x5HB7VCL79P_4:1-22697252\|-	19629779	19686299	+	56521		NCBI_chr7_b31:9602738-9742486	9685956	9742486	AC004936.2:201-139949\|-	201	56731	+	56531		56211	56397/56538 (99%)	24/56538 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10169850	10256979	GA_x5HB7VCL79P_4:1-22697252\|-	19542649	19629778	+	87130		NCBI_chr7_b31:9742487-9829609	9742487	9829609	AC006373.3:201-87323\|-	201	87323	+	87123		86960	87065/87135 (99%)	17/87135 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10256980	10274500	GA_x5HB7VCL79P_4:1-22697252\|-	19525128	19542648	+	17521		NCBI_chr7_b31:9829610-9964313	9829610	9847119	AC004879.2:201-134904\|-	117395	134904	+	17510		17352	17452/17522 (99%)	13/17522 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10274378	10391684	GA_x5HB7VCL79P_4:1-22697252\|-	19407944	19525250	+	117307		NCBI_chr7_b31:9829610-9964313	9847004	9964313	AC004879.2:201-134904\|-	201	117510	+	117310		116955	117176/117327 (99%)	37/117327 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10391685	10477581	GA_x5HB7VCL79P_4:1-22697252\|-	19322047	19407943	+	85897		NCBI_chr7_b31:9964314-10050219	9964314	10050219	AC011282.3:201-86106\|-	201	86106	+	85906		85745	85850/85910 (99%)	17/85910 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10477582	10534786	GA_x5HB7VCL79P_4:1-22697252\|-	19264842	19322046	+	57205		NCBI_chr7_b31:10050220-10107426	10050220	10107426	AC073098.10:201-57407\|-	201	57407	+	57207		57169	57194/57209 (99%)	6/57209 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10534787	10610103	GA_x5HB7VCL79P_4:1-22697252\|-	19189525	19264841	+	75317		NCBI_chr7_b31:10107427-10182743	10107427	10182743	AC009945.2:201-75517\|-	201	75517	+	75317		75256	75292/75318 (99%)	2/75318 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10610104	10701395	GA_x5HB7VCL79P_4:1-22697252\|-	19098233	19189524	+	91292		NCBI_chr7_b31:10182744-10354909	10182744	10274029	AC004949.1:201-172366\|-	81081	172366	+	91286		90852	91134/91306 (99%)	34/91306 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10700649	10782046	GA_x5HB7VCL79P_4:1-22697252\|-	19017582	19098979	+	81398		NCBI_chr7_b31:10182744-10354909	10273498	10354909	AC004949.1:201-172366\|-	201	81612	+	81412		81235	81354/81423 (99%)	36/81423 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10782047	10818585	GA_x5HB7VCL79P_4:1-22697252\|-	18981043	19017581	+	36539		NCBI_chr7_b31:10354910-10391448	10354910	10391448	AC004415.1:201-36739\|-	201	36739	+	36539		36504	36527/36540 (99%)	2/36540 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10818586	10927854	GA_x5HB7VCL79P_4:1-22697252\|-	18871774	18981042	+	109269		NCBI_chr7_b31:10391449-10500717	10391449	10500717	AC004535.1:201-109469\|-	201	109469	+	109269		108977	109153/109279 (99%)	20/109279 (0%)
CRA_TCAGchr7.v1:7102376-29799627	10927855	11009953	GA_x5HB7VCL79P_4:1-22697252\|-	18789675	18871773	+	82099		NCBI_chr7_b31:10500718-10582808	10500718	10582808	AC005376.1:201-82291\|-	201	82291	+	82091		81982	82054/82101 (99%)	12/82101 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11009954	11103305	GA_x5HB7VCL79P_4:1-22697252\|-	18696323	18789674	+	93352		NCBI_chr7_b31:10582809-10676153	10582809	10676153	AC007029.3:2001-95345\|-	2001	95345	+	93345		93108	93256/93354 (99%)	11/93354 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11103306	11110159	GA_x5HB7VCL79P_4:1-22697252\|-	18689469	18696322	+	6854		NCBI_chr7_b31:10676154-10683007	10676154	10683007	AC104089.4:1-6854\|+	1	6854	+	6854		6854	6854/6854 (100%)	0/6854 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11110160	11228803	GA_x5HB7VCL79P_4:1-22697252\|-	18570825	18689468	+	118644		NCBI_chr7_b31:10683008-10817869	10683008	10801643	AC005007.1:2001-136862\|-	18227	136862	+	118636		118497	118594/118646 (99%)	12/118646 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11228760	11245055	GA_x5HB7VCL79P_4:1-22697252\|-	18554573	18570868	+	16296		NCBI_chr7_b31:10683008-10817869	10801574	10817869	AC005007.1:2001-136862\|-	2001	18296	+	16296		16273	16290/16297 (99%)	2/16297 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11245056	11305458	GA_x5HB7VCL79P_4:1-22697252\|-	18494170	18554572	+	60403		NCBI_chr7_b31:10817870-10898018	10817870	10878292	AC080064.6:1-80149\|+	1	60423	+	60423		60224	60357/60430 (99%)	34/60430 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11301228	11310604	GA_x5HB7VCL79P_4:1-22697252\|-	18489024	18498400	+	9377		NCBI_chr7_b31:10817870-10898018	10874062	10883440	AC080064.6:1-80149\|+	56193	65571	+	9379		9350	9367/9379 (99%)	2/9379 (0%)
DELETION	11310604	11310605					0	DELETION	UNMATCHED	10883441	10883552					112	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	11310605	11325067	GA_x5HB7VCL79P_4:1-22697252\|-	18474561	18489023	+	14463		NCBI_chr7_b31:10817870-10898018	10883553	10898018	AC080064.6:1-80149\|+	65684	80149	+	14466		14398	14444/14470 (99%)	11/14470 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11325068	11375369	GA_x5HB7VCL79P_4:1-22697252\|-	18424259	18474560	+	50302		NCBI_chr7_b31:10898019-10980897	10898019	10948321	AC004538.1:1-82879\|+	1	50303	+	50303		50268	50288/50303 (99%)	1/50303 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11375321	11407902	GA_x5HB7VCL79P_4:1-22697252\|-	18391726	18424307	+	32582		NCBI_chr7_b31:10898019-10980897	10948297	10980897	AC004538.1:1-82879\|+	50279	82879	+	32601		32500	32558/32601 (99%)	19/32601 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11407903	11551467	GA_x5HB7VCL79P_4:1-22697252\|-	18248161	18391725	+	143565		NCBI_chr7_b31:10980898-11124448	10980898	11124448	AC004160.1:1-143551\|+	1	143551	+	143551		143367	143498/143569 (99%)	22/143569 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11551468	11647194	GA_x5HB7VCL79P_4:1-22697252\|-	18152434	18248160	+	95727		NCBI_chr7_b31:11124449-11220169	11124449	11220169	AC004141.1:1-95721\|+	1	95721	+	95721		95275	95550/95745 (99%)	42/95745 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11647195	11759413	GA_x5HB7VCL79P_4:1-22697252\|-	18040215	18152433	+	112219		NCBI_chr7_b31:11220170-11332425	11220170	11332425	AC004614.2:1-112256\|+	1	112256	+	112256		111759	112048/112262 (99%)	49/112262 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11759414	11779486	GA_x5HB7VCL79P_4:1-22697252\|-	18020142	18040214	+	20073		NCBI_chr7_b31:11332426-11460214	11332426	11352497	AC010908.3:1-127789\|+	1	20072	+	20072		19978	20042/20081 (99%)	17/20081 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11779407	11887114	GA_x5HB7VCL79P_4:1-22697252\|-	17912514	18020221	+	107708		NCBI_chr7_b31:11332426-11460214	11352464	11460214	AC010908.3:1-127789\|+	20039	127789	+	107751		107288	107557/107756 (99%)	53/107756 (0%)
CRA_TCAGchr7.v1:7102376-29799627	11887115	12043419	GA_x5HB7VCL79P_4:1-22697252\|-	17756209	17912513	+	156305		NCBI_chr7_b31:11460215-11616554	11460215	11616554	AC073109.2:1-156340\|+	1	156340	+	156340		155891	156154/156347 (99%)	49/156347 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12043420	12085207	GA_x5HB7VCL79P_4:1-22697252\|-	17714421	17756208	+	41788		NCBI_chr7_b31:11616555-11753791	11616555	11658341	AC092213.4:1-137237\|+	1	41787	+	41787		41722	41763/41789 (99%)	3/41789 (0%)
UNMATCHED	12085208	12085557					350	UNMATCHED	DELETION	11658340	11658341					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	12085558	12088534	GA_x5HB7VCL79P_4:1-22697252\|-	17711094	17714070	+	2977		NCBI_chr7_b31:11616555-11753791	11658340	11661302	AC092213.4:1-137237\|+	41786	44748	+	2963		2926	2954/2977 (99%)	14/2977 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12088492	12096100	GA_x5HB7VCL79P_4:1-22697252\|-	17703528	17711136	+	7609		NCBI_chr7_b31:11616555-11753791	11661286	11668894	AC092213.4:1-137237\|+	44732	52340	+	7609		7579	7594/7609 (99%)	0/7609 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12096088	12130315	GA_x5HB7VCL79P_4:1-22697252\|-	17669313	17703540	+	34228		NCBI_chr7_b31:11616555-11753791	11668859	11703087	AC092213.4:1-137237\|+	52305	86533	+	34229		34138	34202/34236 (99%)	15/34236 (0%)
DELETION	12130303	12130315					0	DELETION	UNMATCHED	11703088	11703398					322	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	12130303	12130769	GA_x5HB7VCL79P_4:1-22697252\|-	17668859	17669325	+	467		NCBI_chr7_b31:11616555-11753791	11703399	11703865	AC092213.4:1-137237\|+	86845	87311	+	467		457	462/467 (98%)	0/467 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12130735	12180669	GA_x5HB7VCL79P_4:1-22697252\|-	17618959	17668893	+	49935		NCBI_chr7_b31:11616555-11753791	11703853	11753791	AC092213.4:1-137237\|+	87299	137237	+	49939		49695	49860/49960 (99%)	46/49960 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12180670	12253411	GA_x5HB7VCL79P_4:1-22697252\|-	17546217	17618958	+	72742		NCBI_chr7_b31:11753792-11826533	11753792	11826533	AC007270.2:201-72942\|-	201	72942	+	72742		72480	72632/72749 (99%)	14/72749 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12253412	12270976	GA_x5HB7VCL79P_4:1-22697252\|-	17528652	17546216	+	17565		NCBI_chr7_b31:11826534-11877898	11826534	11844104	AC007745.3:201-51565\|-	33995	51565	+	17571		17477	17532/17572 (99%)	8/17572 (0%)
UNMATCHED	12270977	12271533					557	UNMATCHED	DELETION	11843638	11844104					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	12271534	12305796	GA_x5HB7VCL79P_4:1-22697252\|-	17493832	17528094	+	34263		NCBI_chr7_b31:11826534-11877898	11843638	11877898	AC007745.3:201-51565\|-	201	34461	+	34261		34050	34183/34271 (99%)	18/34271 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12305797	12354001	GA_x5HB7VCL79P_4:1-22697252\|-	17445627	17493831	+	48205		NCBI_chr7_b31:11877899-12036468	11877899	11926083	AC007321.2:201-158770\|-	110586	158770	+	48185		47919	48103/48212 (99%)	34/48212 (0%)
DELETION	12353989	12354001					0	DELETION	UNMATCHED	11926084	11926392					320	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	12353989	12464071	GA_x5HB7VCL79P_4:1-22697252\|-	17335557	17445639	+	110083		NCBI_chr7_b31:11877899-12036468	11926393	12036468	AC007321.2:201-158770\|-	201	110276	+	110076		109773	109962/110086 (99%)	13/110086 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12464072	12597060	GA_x5HB7VCL79P_4:1-22697252\|-	17202568	17335556	+	132989		NCBI_chr7_b31:12036469-12205191	12036469	12169469	AC013470.10:2001-170723\|-	37723	170723	+	133001		132374	132771/133028 (99%)	66/133028 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12596626	12632353	GA_x5HB7VCL79P_4:1-22697252\|-	17167275	17203002	+	35728		NCBI_chr7_b31:12036469-12205191	12169470	12205191	AC013470.10:2001-170723\|-	2001	37722	+	35722		35624	35691/35728 (99%)	6/35728 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12632354	12638306	GA_x5HB7VCL79P_4:1-22697252\|-	17161322	17167274	+	5953		NCBI_chr7_b31:12205192-12219855	12205192	12211143	AC092064.4:1-14664\|+	1	5952	+	5952		5916	5940/5954 (99%)	3/5954 (0%)
DELETION	12637824	12638306					0	DELETION	UNMATCHED	12211144	12212081					1419	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	12637824	12645627	GA_x5HB7VCL79P_4:1-22697252\|-	17154001	17161804	+	7804		NCBI_chr7_b31:12205192-12219855	12212082	12219855	AC092064.4:1-14664\|+	6891	14664	+	7774		7633	7731/7804 (99%)	30/7804 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12645628	12741907	GA_x5HB7VCL79P_4:1-22697252\|-	17057721	17154000	+	96280		NCBI_chr7_b31:12219856-12327093	12219856	12316126	AC005281.2:1-107238\|+	1	96271	+	96271		96075	96206/96287 (99%)	23/96287 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12741845	12752856	GA_x5HB7VCL79P_4:1-22697252\|-	17046772	17057783	+	11012		NCBI_chr7_b31:12219856-12327093	12316084	12327093	AC005281.2:1-107238\|+	96229	107238	+	11010		10971	10994/11012 (99%)	2/11012 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12752857	12755903	GA_x5HB7VCL79P_4:1-22697252\|-	17043725	17046771	+	3047		NCBI_chr7_b31:12327094-12330139	12327094	12330139	AC073232.7:1-3046\|+	1	3046	+	3046		3028	3040/3047 (99%)	1/3047 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12755904	12829188	GA_x5HB7VCL79P_4:1-22697252\|-	16970440	17043724	+	73285		NCBI_chr7_b31:12330140-12403420	12330140	12403420	AC011891.3:1-73281\|+	1	73281	+	73281		73218	73265/73287 (99%)	8/73287 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12829189	12930985	GA_x5HB7VCL79P_4:1-22697252\|-	16868643	16970439	+	101797		NCBI_chr7_b31:12403421-12505228	12403421	12505228	AC005228.1:1-101808\|+	1	101808	+	101808		101438	101672/101821 (99%)	37/101821 (0%)
CRA_TCAGchr7.v1:7102376-29799627	12930986	13034028	GA_x5HB7VCL79P_4:1-22697252\|-	16765600	16868642	+	103043		NCBI_chr7_b31:12505229-12629198	12505229	12608265	AC006000.3:1-123970\|+	1	103037	+	103037		102886	102986/103046 (99%)	12/103046 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13034026	13055000	GA_x5HB7VCL79P_4:1-22697252\|-	16744628	16765602	+	20975		NCBI_chr7_b31:12505229-12629198	12608228	12629198	AC006000.3:1-123970\|+	103000	123970	+	20971		20918	20954/20975 (99%)	4/20975 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13055001	13181196	GA_x5HB7VCL79P_4:1-22697252\|-	16618432	16744627	+	126196		NCBI_chr7_b31:12629199-12755389	12629199	12755389	AC007243.4:1-126191\|+	1	126191	+	126191		126123	126175/126202 (99%)	17/126202 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13181197	13310964	GA_x5HB7VCL79P_4:1-22697252\|-	16488664	16618431	+	129768		NCBI_chr7_b31:12755390-12885178	12755390	12885178	AC005681.2:1-129789\|+	1	129789	+	129789		129299	129619/129814 (99%)	71/129814 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13310965	13459571	GA_x5HB7VCL79P_4:1-22697252\|-	16340057	16488663	+	148607		NCBI_chr7_b31:12885179-13033797	12885179	13033797	AC006996.3:1-148619\|+	1	148619	+	148619		148054	148404/148644 (99%)	62/148644 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13459572	13590520	GA_x5HB7VCL79P_4:1-22697252\|-	16209108	16340056	+	130949		NCBI_chr7_b31:13033798-13164740	13033798	13164740	AC011287.4:1-130943\|+	1	130943	+	130943		130180	130660/130985 (99%)	78/130985 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13590521	13612380	GA_x5HB7VCL79P_4:1-22697252\|-	16187248	16209107	+	21860		NCBI_chr7_b31:13164741-13186600	13164741	13186600	AC084312.4:1-21860\|+	1	21860	+	21860		21808	21834/21860 (99%)	0/21860 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13612381	13677653	GA_x5HB7VCL79P_4:1-22697252\|-	16121975	16187247	+	65273		NCBI_chr7_b31:13186601-13251897	13186601	13251897	AC073327.4:1-65297\|+	1	65297	+	65297		64845	65126/65312 (99%)	54/65312 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13677654	13685624	GA_x5HB7VCL79P_4:1-22697252\|-	16114004	16121974	+	7971		NCBI_chr7_b31:13251898-13376747	13251898	13259869	AC011288.4:1-124850\|+	1	7972	+	7972		7933	7955/7972 (99%)	1/7972 (0%)
DELETION	13685568	13685624					0	DELETION	UNMATCHED	13259870	13259884					70	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	13685568	13740693	GA_x5HB7VCL79P_4:1-22697252\|-	16058935	16114060	+	55126		NCBI_chr7_b31:13251898-13376747	13259885	13315006	AC011288.4:1-124850\|+	7988	63109	+	55122		55048	55092/55126 (99%)	4/55126 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13740689	13747064	GA_x5HB7VCL79P_4:1-22697252\|-	16052564	16058939	+	6376		NCBI_chr7_b31:13251898-13376747	13315001	13321376	AC011288.4:1-124850\|+	63104	69479	+	6376		6364	6370/6376 (99%)	0/6376 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13746983	13802353	GA_x5HB7VCL79P_4:1-22697252\|-	15997275	16052645	+	55371		NCBI_chr7_b31:13251898-13376747	13321375	13376747	AC011288.4:1-124850\|+	69478	124850	+	55373		55232	55326/55380 (99%)	16/55380 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13802354	13812931	GA_x5HB7VCL79P_4:1-22697252\|-	15986697	15997274	+	10578		NCBI_chr7_b31:13376748-13564909	13376748	13387321	AC005019.1:201-188362\|-	177789	188362	+	10574		10525	10560/10580 (99%)	8/10580 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13812891	13990450	GA_x5HB7VCL79P_4:1-22697252\|-	15809178	15986737	+	177560		NCBI_chr7_b31:13376748-13564909	13387322	13564909	AC005019.1:201-188362\|-	201	177788	+	177588		176833	177292/177621 (99%)	94/177621 (0%)
CRA_TCAGchr7.v1:7102376-29799627	13990451	14079845	GA_x5HB7VCL79P_4:1-22697252\|-	15719783	15809177	+	89395		NCBI_chr7_b31:13564910-13674068	13564910	13654303	AC004857.1:201-109359\|-	19966	109359	+	89394		89320	89369/89398 (99%)	7/89398 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14079803	14099592	GA_x5HB7VCL79P_4:1-22697252\|-	15700036	15719825	+	19790		NCBI_chr7_b31:13564910-13674068	13654281	13674068	AC004857.1:201-109359\|-	201	19988	+	19788		19550	19695/19795 (99%)	12/19795 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14099593	14231443	GA_x5HB7VCL79P_4:1-22697252\|-	15568185	15700035	+	131851		NCBI_chr7_b31:13674069-13805918	13674069	13805918	AC004909.2:201-132050\|-	201	132050	+	131850		131800	131834/131853 (99%)	5/131853 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14231444	14321710	GA_x5HB7VCL79P_4:1-22697252\|-	15477918	15568184	+	90267		NCBI_chr7_b31:13805919-13957034	13805919	13896233	AC005039.1:201-151316\|-	61002	151316	+	90315		89851	90140/90339 (99%)	96/90339 (0%)
DELETION	14321692	14321710					0	DELETION	UNMATCHED	13896234	13896427					211	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	14321692	14382296	GA_x5HB7VCL79P_4:1-22697252\|-	15417332	15477936	+	60605		NCBI_chr7_b31:13805919-13957034	13896428	13957034	AC005039.1:201-151316\|-	201	60807	+	60607		60410	60542/60624 (99%)	36/60624 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14382297	14413346	GA_x5HB7VCL79P_4:1-22697252\|-	15386282	15417331	+	31050		NCBI_chr7_b31:13957035-14025298	13957035	13988099	AC005248.1:201-68464\|-	37400	68464	+	31065		30872	30993/31069 (99%)	23/31069 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14413313	14450572	GA_x5HB7VCL79P_4:1-22697252\|-	15349056	15386315	+	37260		NCBI_chr7_b31:13957035-14025298	13988044	14025298	AC005248.1:201-68464\|-	201	37455	+	37255		37152	37222/37262 (99%)	9/37262 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14450573	14489185	GA_x5HB7VCL79P_4:1-22697252\|-	15310443	15349055	+	38613		NCBI_chr7_b31:14025299-14128338	14025299	14063893	AC011229.2:2001-105040\|-	66446	105040	+	38595		38466	38552/38613 (99%)	18/38613 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14489102	14518651	GA_x5HB7VCL79P_4:1-22697252\|-	15280977	15310526	+	29550		NCBI_chr7_b31:14025299-14128338	14063886	14093422	AC011229.2:2001-105040\|-	36917	66453	+	29537		29329	29468/29557 (99%)	27/29557 (0%)
DELETION	14518638	14518651					0	DELETION	UNMATCHED	14093423	14093729					319	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	14518638	14553252	GA_x5HB7VCL79P_4:1-22697252\|-	15246376	15280990	+	34615		NCBI_chr7_b31:14025299-14128338	14093730	14128338	AC011229.2:2001-105040\|-	2001	36609	+	34609		34472	34562/34622 (99%)	20/34622 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14553253	14580344	GA_x5HB7VCL79P_4:1-22697252\|-	15219284	15246375	+	27092		NCBI_chr7_b31:14128339-14272436	14128339	14155418	AC105459.1:1-144098\|+	1	27080	+	27080		26843	26979/27095 (99%)	18/27095 (0%)
UNMATCHED	14580345	14581583					1239	UNMATCHED	DELETION	14155261	14155418					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	14581584	14677846	GA_x5HB7VCL79P_4:1-22697252\|-	15121782	15218044	+	96263		NCBI_chr7_b31:14128339-14272436	14155261	14251548	AC105459.1:1-144098\|+	26923	123210	+	96288		95616	96037/96308 (99%)	65/96308 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14677490	14698664	GA_x5HB7VCL79P_4:1-22697252\|-	15100964	15122138	+	21175		NCBI_chr7_b31:14128339-14272436	14251259	14272436	AC105459.1:1-144098\|+	122921	144098	+	21178		21081	21143/21180 (99%)	7/21180 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14698665	14751510	GA_x5HB7VCL79P_4:1-22697252\|-	15048118	15100963	+	52846		NCBI_chr7_b31:14272437-14428363	14272437	14325284	AC073258.9:1-155927\|+	1	52848	+	52848		52691	52787/52853 (99%)	12/52853 (0%)
DELETION	14751451	14751510					0	DELETION	UNMATCHED	14325285	14325305					79	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	14751451	14854507	GA_x5HB7VCL79P_4:1-22697252\|-	14945121	15048177	+	103057		NCBI_chr7_b31:14272437-14428363	14325306	14428363	AC073258.9:1-155927\|+	52870	155927	+	103058		102552	102864/103081 (99%)	47/103081 (0%)
CRA_TCAGchr7.v1:7102376-29799627	14854508	14967397	GA_x5HB7VCL79P_4:1-22697252\|-	14832231	14945120	+	112890		NCBI_chr7_b31:14428364-14541248	14428364	14541248	AC006150.2:1-112885\|+	1	112885	+	112885		112784	112853/112892 (99%)	9/112892 (0%)
UNMATCHED	14967398	14967409					12	UNMATCHED	DELETION	14541248	14541249					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	14967410	14980970	GA_x5HB7VCL79P_4:1-22697252\|-	14818658	14832218	+	13561		NCBI_chr7_b31:14541249-14734174	14541249	14554806	AC006045.2:1-192926\|+	1	13558	+	13558		13522	13549/13561 (99%)	3/13561 (0%)
DELETION	14980956	14980970					0	DELETION	UNMATCHED	14554807	14555109					316	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	14980956	15160048	GA_x5HB7VCL79P_4:1-22697252\|-	14639580	14818672	+	179093		NCBI_chr7_b31:14541249-14734174	14555110	14734174	AC006045.2:1-192926\|+	13862	192926	+	179065		178403	178835/179132 (99%)	106/179132 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15160049	15205120	GA_x5HB7VCL79P_4:1-22697252\|-	14594508	14639579	+	45072		NCBI_chr7_b31:14734175-14853510	14734175	14779224	AC006458.2:1-119336\|+	1	45050	+	45050		44936	45022/45073 (99%)	24/45073 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15205069	15279455	GA_x5HB7VCL79P_4:1-22697252\|-	14520173	14594559	+	74387		NCBI_chr7_b31:14734175-14853510	14779123	14853510	AC006458.2:1-119336\|+	44949	119336	+	74388		74169	74299/74394 (99%)	13/74394 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15279456	15409588	GA_x5HB7VCL79P_4:1-22697252\|-	14390040	14520172	+	130133		NCBI_chr7_b31:14853511-14983636	14853511	14983636	AC091789.5:1-130126\|+	1	130126	+	130126		129756	130003/130160 (99%)	61/130160 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15409589	15528567	GA_x5HB7VCL79P_4:1-22697252\|-	14271061	14390039	+	118979		NCBI_chr7_b31:14983637-15102621	14983637	15102621	AC099651.4:1-118985\|+	1	118985	+	118985		118589	118858/119007 (99%)	50/119007 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15528568	15546302	GA_x5HB7VCL79P_4:1-22697252\|-	14253326	14271060	+	17735		NCBI_chr7_b31:15102622-15146322	15102622	15120323	AC099412.4:1-43701\|+	1	17702	+	17702		17592	17671/17735 (99%)	33/17735 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15542282	15572301	GA_x5HB7VCL79P_4:1-22697252\|-	14227327	14257346	+	30020		NCBI_chr7_b31:15102622-15146322	15116303	15146322	AC099412.4:1-43701\|+	13682	43701	+	30020		29793	29931/30029 (99%)	18/30029 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15572302	15639758	GA_x5HB7VCL79P_4:1-22697252\|-	14159870	14227326	+	67457		NCBI_chr7_b31:15146323-15227792	15146323	15213752	AC012061.4:1-81470\|+	1	67430	+	67430		67030	67288/67461 (99%)	35/67461 (0%)
VARIATION	15639759	15641544					1786	VARIATION	VARIATION	15213753	15213793					41	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	15641545	15655535	GA_x5HB7VCL79P_4:1-22697252\|-	14144093	14158083	+	13991		NCBI_chr7_b31:15146323-15227792	15213794	15227792	AC012061.4:1-81470\|+	67472	81470	+	13999		13870	13945/14000 (99%)	10/14000 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15655536	15737559	GA_x5HB7VCL79P_4:1-22697252\|-	14062069	14144092	+	82024		NCBI_chr7_b31:15227793-15309822	15227793	15309822	AC004452.1:1-82030\|+	1	82030	+	82030		81696	81914/82047 (99%)	40/82047 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15737560	15743666	GA_x5HB7VCL79P_4:1-22697252\|-	14055962	14062068	+	6107		NCBI_chr7_b31:15309823-15442859	15309823	15315929	AC005550.1:1-133037\|+	1	6107	+	6107		6101	6104/6107 (99%)	0/6107 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15743663	15870622	GA_x5HB7VCL79P_4:1-22697252\|-	13929006	14055965	+	126960		NCBI_chr7_b31:15309823-15442859	15315904	15442859	AC005550.1:1-133037\|+	6082	133037	+	126956		126815	126903/126966 (99%)	16/126966 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15870623	15957181	GA_x5HB7VCL79P_4:1-22697252\|-	13842447	13929005	+	86559		NCBI_chr7_b31:15442860-15529417	15442860	15529417	AC006041.2:1-86558\|+	1	86558	+	86558		86433	86512/86566 (99%)	15/86566 (0%)
CRA_TCAGchr7.v1:7102376-29799627	15957182	16065411	GA_x5HB7VCL79P_4:1-22697252\|-	13734217	13842446	+	108230		NCBI_chr7_b31:15529418-15694744	15529418	15637647	AC005536.2:1-165327\|+	1	108230	+	108230		107618	108028/108268 (99%)	76/108268 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16065348	16078386	GA_x5HB7VCL79P_4:1-22697252\|-	13721242	13734280	+	13039		NCBI_chr7_b31:15529418-15694744	15637606	15650677	AC005536.2:1-165327\|+	108189	121260	+	13072		12932	13007/13072 (99%)	33/13072 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16077733	16122459	GA_x5HB7VCL79P_4:1-22697252\|-	13677169	13721895	+	44727		NCBI_chr7_b31:15529418-15694744	15650024	15694744	AC005536.2:1-165327\|+	120607	165327	+	44721		44590	44675/44730 (99%)	12/44730 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16122460	16128855	GA_x5HB7VCL79P_4:1-22697252\|-	13670773	13677168	+	6396		NCBI_chr7_b31:15694745-15701140	15694745	15701140	AC074006.3:1-6396\|+	1	6396	+	6396		6382	6389/6396 (99%)	0/6396 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16128856	16201344	GA_x5HB7VCL79P_4:1-22697252\|-	13598284	13670772	+	72489		NCBI_chr7_b31:15701141-15883312	15701141	15773629	AC006035.2:1-182172\|+	1	72489	+	72489		72232	72395/72503 (99%)	28/72503 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16200898	16311046	GA_x5HB7VCL79P_4:1-22697252\|-	13488582	13598730	+	110149		NCBI_chr7_b31:15701141-15883312	15773151	15883312	AC006035.2:1-182172\|+	72011	182172	+	110162		109950	110082/110164 (99%)	17/110164 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16311047	16344926	GA_x5HB7VCL79P_4:1-22697252\|-	13454702	13488581	+	33880		NCBI_chr7_b31:15883313-15917193	15883313	15917193	AC073629.6:1-33881\|+	1	33881	+	33881		33854	33873/33882 (99%)	3/33882 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16344927	16455213	GA_x5HB7VCL79P_4:1-22697252\|-	13344415	13454701	+	110287		NCBI_chr7_b31:15917194-16027455	15917194	16027455	AC004741.2:1-110262\|+	1	110262	+	110262		109964	110144/110289 (99%)	29/110289 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16455214	16578589	GA_x5HB7VCL79P_4:1-22697252\|-	13221039	13344414	+	123376		NCBI_chr7_b31:16027456-16150827	16027456	16150827	AC079155.7:1-123372\|+	1	123372	+	123372		123196	123302/123378 (99%)	8/123378 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16578590	16746624	GA_x5HB7VCL79P_4:1-22697252\|-	13053004	13221038	+	168035		NCBI_chr7_b31:16150828-16318874	16150828	16318874	AC005014.2:1-168047\|+	1	168047	+	168047		167714	167938/168062 (99%)	42/168062 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16746625	16807199	GA_x5HB7VCL79P_4:1-22697252\|-	12992429	13053003	+	60575		NCBI_chr7_b31:16318875-16379450	16318875	16379450	AC073201.6:1-60576\|+	1	60576	+	60576		60448	60532/60581 (99%)	11/60581 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16807200	16819849	GA_x5HB7VCL79P_4:1-22697252\|-	12979779	12992428	+	12650		NCBI_chr7_b31:16379451-16543093	16379451	16392100	AC073333.5:1-163643\|+	1	12650	+	12650		12644	12647/12650 (99%)	0/12650 (0%)
UNMATCHED	16819850	16820392					543	UNMATCHED	DELETION	16392066	16392100					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	16820393	16844822	GA_x5HB7VCL79P_4:1-22697252\|-	12954806	12979235	+	24430		NCBI_chr7_b31:16379451-16543093	16392066	16416501	AC073333.5:1-163643\|+	12616	37051	+	24436		24349	24401/24438 (99%)	10/24438 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16844690	16971393	GA_x5HB7VCL79P_4:1-22697252\|-	12828235	12954938	+	126704		NCBI_chr7_b31:16379451-16543093	16416401	16543093	AC073333.5:1-163643\|+	36951	163643	+	126693		126256	126545/126724 (99%)	51/126724 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16971394	16973338	GA_x5HB7VCL79P_4:1-22697252\|-	12826290	12828234	+	1945		NCBI_chr7_b31:16543094-16711514	16543094	16545036	AC098592.5:1-168421\|+	1	1943	+	1943		1907	1931/1945 (99%)	2/1945 (0%)
CRA_TCAGchr7.v1:7102376-29799627	16973288	17008944	GA_x5HB7VCL79P_4:1-22697252\|-	12790684	12826340	+	35657		NCBI_chr7_b31:16543094-16711514	16545015	16580673	AC098592.5:1-168421\|+	1922	37580	+	35659		35336	35531/35676 (99%)	36/35676 (0%)
DELETION	17008928	17008944					0	DELETION	UNMATCHED	16580674	16580995					337	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	17008928	17069924	GA_x5HB7VCL79P_4:1-22697252\|-	12729704	12790700	+	60997		NCBI_chr7_b31:16543094-16711514	16580996	16641948	AC098592.5:1-168421\|+	37903	98855	+	60953		60572	60804/61001 (99%)	52/61001 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17069167	17139511	GA_x5HB7VCL79P_4:1-22697252\|-	12660117	12730461	+	70345		NCBI_chr7_b31:16543094-16711514	16641191	16711514	AC098592.5:1-168421\|+	98098	168421	+	70324		70118	70260/70347 (99%)	25/70347 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17139512	17182058	GA_x5HB7VCL79P_4:1-22697252\|-	12617570	12660116	+	42547		NCBI_chr7_b31:16711515-16754041	16711515	16754041	AC010749.3:201-42727\|-	201	42727	+	42527		42363	42481/42559 (99%)	44/42559 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17182059	17312245	GA_x5HB7VCL79P_4:1-22697252\|-	12487383	12617569	+	130187		NCBI_chr7_b31:16754042-16884232	16754042	16884232	AC073332.13:2001-132191\|-	2001	132191	+	130191		129790	130065/130215 (99%)	52/130215 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17312246	17320514	GA_x5HB7VCL79P_4:1-22697252\|-	12479114	12487382	+	8269		NCBI_chr7_b31:16884233-16915466	16884233	16892486	AC092099.4:1-31234\|+	1	8254	+	8254		8157	8228/8274 (99%)	25/8274 (0%)
CRA_TCAGchr7.v1:17320515-17320668	17320515	17320668					154		NCBI_chr7_b31:16892487-16892623	16892487	16892623					137
CRA_TCAGchr7.v1:7102376-29799627	17320669	17343513	GA_x5HB7VCL79P_4:1-22697252\|-	12456115	12478959	+	22845		NCBI_chr7_b31:16884233-16915466	16892624	16915466	AC092099.4:1-31234\|+	8392	31234	+	22843		22828	22839/22845 (99%)	2/22845 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17343514	17466662	GA_x5HB7VCL79P_4:1-22697252\|-	12332966	12456114	+	123149		NCBI_chr7_b31:16915467-17038602	16915467	17038602	AC003075.2:1-123136\|+	1	123136	+	123136		122942	123083/123159 (99%)	33/123159 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17466663	17603688	GA_x5HB7VCL79P_4:1-22697252\|-	12195940	12332965	+	137026		NCBI_chr7_b31:17038603-17175630	17038603	17175630	AC019117.4:1-137028\|+	1	137028	+	137028		136588	136853/137043 (99%)	32/137043 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17603689	17611636	GA_x5HB7VCL79P_4:1-22697252\|-	12187992	12195939	+	7948		NCBI_chr7_b31:17175631-17278784	17175631	17183570	AC017060.7:1-103154\|+	1	7940	+	7940		7905	7932/7949 (99%)	10/7949 (0%)
UNMATCHED	17611637	17611675					39	UNMATCHED	DELETION	17183567	17183570					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	17611676	17706890	GA_x5HB7VCL79P_4:1-22697252\|-	12092738	12187952	+	95215		NCBI_chr7_b31:17175631-17278784	17183567	17278784	AC017060.7:1-103154\|+	7937	103154	+	95218		94687	95023/95244 (99%)	55/95244 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17706891	17844938	GA_x5HB7VCL79P_4:1-22697252\|-	11954690	12092737	+	138048		NCBI_chr7_b31:17278785-17459152	17278785	17416820	AC006482.3:1-180368\|+	1	138036	+	138036		137678	137922/138071 (99%)	58/138071 (0%)
VARIATION	17844939	17844945					7	VARIATION	VARIATION	17416821	17416848					28	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	17844946	17887236	GA_x5HB7VCL79P_4:1-22697252\|-	11912392	11954682	+	42291		NCBI_chr7_b31:17278785-17459152	17416849	17459152	AC006482.3:1-180368\|+	138065	180368	+	42304		42040	42201/42307 (99%)	19/42307 (0%)
CRA_TCAGchr7.v1:7102376-29799627	17887237	17913084	GA_x5HB7VCL79P_4:1-22697252\|-	11886544	11912391	+	25848		NCBI_chr7_b31:17459153-17607066	17459153	17484997	AC073205.6:1-147914\|+	1	25845	+	25845		25788	25830/25852 (99%)	11/25852 (0%)
DELETION	17913071	17913084					0	DELETION	UNMATCHED	17484998	17485021					36	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	17913071	18035114	GA_x5HB7VCL79P_4:1-22697252\|-	11764514	11886557	+	122044		NCBI_chr7_b31:17459153-17607066	17485022	17607066	AC073205.6:1-147914\|+	25870	147914	+	122045		121949	122021/122053 (99%)	17/122053 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18035115	18042109	GA_x5HB7VCL79P_4:1-22697252\|-	11757519	11764513	+	6995		NCBI_chr7_b31:17607067-17759985	17607067	17614057	AC080080.5:1-152919\|+	1	6991	+	6991		6964	6982/6995 (99%)	4/6995 (0%)
CRA_TCAGchr7.v1:18042110-18101436	18042110	18101436					59327		NCBI_chr7_b31:17614058-17673497	17614058	17673497					59440
CRA_TCAGchr7.v1:7102376-29799627	18101437	18113924	GA_x5HB7VCL79P_4:1-22697252\|-	11685704	11698191	+	12488		NCBI_chr7_b31:17607067-17759985	17673498	17685955	AC080080.5:1-152919\|+	66432	78889	+	12458		12307	12414/12496 (99%)	46/12496 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18103035	18187945	GA_x5HB7VCL79P_4:1-22697252\|-	11611683	11696593	+	84911		NCBI_chr7_b31:17607067-17759985	17675068	17759985	AC080080.5:1-152919\|+	68002	152919	+	84918		84486	84774/84942 (99%)	55/84942 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18187946	18193928	GA_x5HB7VCL79P_4:1-22697252\|-	11605700	11611682	+	5983		NCBI_chr7_b31:17759986-17765966	17759986	17765966	AC092200.5:1-5981\|+	1	5981	+	5981		5955	5977/5984 (99%)	4/5984 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18193929	18198344	GA_x5HB7VCL79P_4:1-22697252\|-	11601284	11605699	+	4416		NCBI_chr7_b31:17765967-17810146	17765967	17770382	AC074193.6:1-44180\|+	1	4416	+	4416		4416	4416/4416 (100%)	0/4416 (0%)
VARIATION	18198345	18198980					636	VARIATION	VARIATION	17770383	17770973					591	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	18198981	18199138	GA_x5HB7VCL79P_4:1-22697252\|-	11600490	11600647	+	158		NCBI_chr7_b31:17765967-17810146	17770974	17771132	AC074193.6:1-44180\|+	5008	5166	+	159		152	158/159 (99%)	1/159 (0%)
VARIATION	18199139	18199171					33	VARIATION	VARIATION	17771133	17771166					34	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	18199172	18217361	GA_x5HB7VCL79P_4:1-22697252\|-	11582267	11600456	+	18190		NCBI_chr7_b31:17765967-17810146	17771167	17789357	AC074193.6:1-44180\|+	5201	23391	+	18191		18137	18172/18192 (99%)	3/18192 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18217077	18237904	GA_x5HB7VCL79P_4:1-22697252\|-	11561724	11582551	+	20828		NCBI_chr7_b31:17765967-17810146	17789316	17810146	AC074193.6:1-44180\|+	23350	44180	+	20831		20772	20809/20831 (99%)	3/20831 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18237905	18398436	GA_x5HB7VCL79P_4:1-22697252\|-	11401192	11561723	+	160532		NCBI_chr7_b31:17810147-17970677	17810147	17970677	AC005249.2:1-160531\|+	1	160531	+	160531		160203	160420/160552 (99%)	41/160552 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18398437	18420690	GA_x5HB7VCL79P_4:1-22697252\|-	11378938	11401191	+	22254		NCBI_chr7_b31:17970678-17992956	17970678	17992956	AC091697.4:1-22279\|+	1	22279	+	22279		22167	22233/22279 (99%)	25/22279 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18420691	18504151	GA_x5HB7VCL79P_4:1-22697252\|-	11295477	11378937	+	83461		NCBI_chr7_b31:17992957-18135791	17992957	18076411	AC010082.4:201-143035\|-	59581	143035	+	83455		83209	83377/83485 (99%)	54/83485 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18503959	18534339	GA_x5HB7VCL79P_4:1-22697252\|-	11265289	11295669	+	30381		NCBI_chr7_b31:17992957-18135791	18076215	18106596	AC010082.4:201-143035\|-	29396	59777	+	30382		30246	30322/30383 (99%)	3/30383 (0%)
UNMATCHED	18534340	18534484					145	UNMATCHED	DELETION	18106243	18106596					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	18534485	18564023	GA_x5HB7VCL79P_4:1-22697252\|-	11235605	11265143	+	29539		NCBI_chr7_b31:17992957-18135791	18106243	18135791	AC010082.4:201-143035\|-	201	29749	+	29549		29412	29500/29553 (99%)	18/29553 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18564024	18703727	GA_x5HB7VCL79P_4:1-22697252\|-	11095901	11235604	+	139704		NCBI_chr7_b31:18135792-18275510	18135792	18275510	AC002433.2:201-139919\|-	201	139919	+	139719		139482	139635/139728 (99%)	33/139728 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18703728	18804642	GA_x5HB7VCL79P_4:1-22697252\|-	10994986	11095900	+	100915		NCBI_chr7_b31:18275511-18376427	18275511	18376427	AC002124.2:7-100923\|-	7	100923	+	100917		100760	100858/100921 (99%)	10/100921 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18804643	18856507	GA_x5HB7VCL79P_4:1-22697252\|-	10943121	10994985	+	51865		NCBI_chr7_b31:18376428-18461860	18376428	18428257	AC002088.2:201-85633\|-	33804	85633	+	51830		51626	51759/51867 (99%)	39/51867 (0%)
DELETION	18856189	18856507					0	DELETION	UNMATCHED	18428258	18429492					1552	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	18856189	18888544	GA_x5HB7VCL79P_4:1-22697252\|-	10911084	10943439	+	32356		NCBI_chr7_b31:18376428-18461860	18429493	18461860	AC002088.2:201-85633\|-	201	32568	+	32368		32318	32348/32368 (99%)	12/32368 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18888545	18984531	GA_x5HB7VCL79P_4:1-22697252\|-	10815097	10911083	+	95987		NCBI_chr7_b31:18461861-18557877	18461861	18557877	AC002410.2:201-96217\|-	201	96217	+	96017		95515	95820/96030 (99%)	56/96030 (0%)
CRA_TCAGchr7.v1:7102376-29799627	18984532	19064635	GA_x5HB7VCL79P_4:1-22697252\|-	10734993	10815096	+	80104		NCBI_chr7_b31:18557878-18638008	18557878	18638008	AC004994.1:201-80331\|-	201	80331	+	80131		79876	80031/80136 (99%)	37/80136 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19064636	19150047	GA_x5HB7VCL79P_4:1-22697252\|-	10649581	10734992	+	85412		NCBI_chr7_b31:18638009-18723387	18638009	18723387	AC004744.1:201-85579\|-	201	85579	+	85379		85109	85287/85420 (99%)	49/85420 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19150048	19167757	GA_x5HB7VCL79P_4:1-22697252\|-	10631871	10649580	+	17710		NCBI_chr7_b31:18723388-18749534	18723388	18741097	AC003073.2:201-26347\|-	8638	26347	+	17710		17613	17670/17712 (99%)	4/17712 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19167697	19176147	GA_x5HB7VCL79P_4:1-22697252\|-	10623481	10631931	+	8451		NCBI_chr7_b31:18723388-18749534	18741083	18749534	AC003073.2:201-26347\|-	201	8652	+	8452		8388	8428/8453 (99%)	3/8453 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19176148	19364148	GA_x5HB7VCL79P_4:1-22697252\|-	10435480	10623480	+	188001		NCBI_chr7_b31:18749535-18937539	18749535	18937539	AC003986.2:201-188205\|-	201	188205	+	188005		187842	187957/188012 (99%)	18/188012 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19364149	19418587	GA_x5HB7VCL79P_4:1-22697252\|-	10381041	10435479	+	54439		NCBI_chr7_b31:18937540-19084059	18937540	18991984	AC006381.2:201-146720\|-	92276	146720	+	54445		54363	54416/54449 (99%)	14/54449 (0%)
DELETION	19418524	19418587					0	DELETION	UNMATCHED	18991985	18991986					64	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	19418524	19510579	GA_x5HB7VCL79P_4:1-22697252\|-	10289049	10381104	+	92056		NCBI_chr7_b31:18937540-19084059	18991987	19084059	AC006381.2:201-146720\|-	201	92273	+	92073		91660	91918/92086 (99%)	43/92086 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19510580	19534851	GA_x5HB7VCL79P_4:1-22697252\|-	10264777	10289048	+	24272		NCBI_chr7_b31:19084060-19258186	19084060	19108331	AC007091.3:201-174327\|-	150056	174327	+	24272		24196	24245/24274 (99%)	4/24274 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19534831	19684741	GA_x5HB7VCL79P_4:1-22697252\|-	10114887	10264797	+	149911		NCBI_chr7_b31:19084060-19258186	19108287	19258186	AC007091.3:201-174327\|-	201	150100	+	149900		149236	149638/149935 (99%)	59/149935 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19684742	19776005	GA_x5HB7VCL79P_4:1-22697252\|-	10023623	10114886	+	91264		NCBI_chr7_b31:19258187-19349446	19258187	19349446	AC006397.1:201-91460\|-	201	91460	+	91260		90949	91137/91270 (99%)	16/91270 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19776006	19826315	GA_x5HB7VCL79P_4:1-22697252\|-	9973313	10023622	+	50310		NCBI_chr7_b31:19349447-19399754	19349447	19399754	AC004940.1:201-50508\|-	201	50508	+	50308		50290	50305/50310 (99%)	2/50310 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19826316	19936179	GA_x5HB7VCL79P_4:1-22697252\|-	9863449	9973312	+	109864		NCBI_chr7_b31:19399755-19521675	19399755	19509619	AC004543.2:201-122121\|-	12257	122121	+	109865		109598	109771/109879 (99%)	29/109879 (0%)
DELETION	19936065	19936179					0	DELETION	UNMATCHED	19509620	19509660					154	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	19936065	19948090	GA_x5HB7VCL79P_4:1-22697252\|-	9851538	9863563	+	12026		NCBI_chr7_b31:19399755-19521675	19509661	19521675	AC004543.2:201-122121\|-	201	12215	+	12015		11872	11957/12027 (99%)	13/12027 (0%)
CRA_TCAGchr7.v1:7102376-29799627	19948091	20026676	GA_x5HB7VCL79P_4:1-22697252\|-	9772952	9851537	+	78586		NCBI_chr7_b31:19521676-19600269	19521676	19600269	AC003990.2:201-78794\|-	201	78794	+	78594		78314	78486/78603 (99%)	26/78603 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20026677	20052712	GA_x5HB7VCL79P_4:1-22697252\|-	9746916	9772951	+	26036		NCBI_chr7_b31:19600270-19719996	19600270	19626307	AC005062.1:201-119927\|-	93890	119927	+	26038		25852	25963/26044 (99%)	14/26044 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20052576	20067177	GA_x5HB7VCL79P_4:1-22697252\|-	9732451	9747052	+	14602		NCBI_chr7_b31:19600270-19719996	19626082	19640671	AC005062.1:201-119927\|-	79526	94115	+	14590		14321	14473/14610 (99%)	28/14610 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20052583	20146490	GA_x5HB7VCL79P_4:1-22697252\|-	9653138	9747045	+	93908		NCBI_chr7_b31:19600270-19719996	19626085	19719996	AC005062.1:201-119927\|-	201	94112	+	93912		93418	93715/93937 (99%)	54/93937 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20146491	20254713	GA_x5HB7VCL79P_4:1-22697252\|-	9544915	9653137	+	108223		NCBI_chr7_b31:19719997-19828214	19719997	19828214	AC007001.2:201-108418\|-	201	108418	+	108218		107935	108122/108234 (99%)	27/108234 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20254714	20398989	GA_x5HB7VCL79P_4:1-22697252\|-	9400639	9544914	+	144276		NCBI_chr7_b31:19828215-19972499	19828215	19972499	AC005083.1:2001-146285\|-	2001	146285	+	144285		144217	144259/144286 (99%)	11/144286 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20398990	20426728	GA_x5HB7VCL79P_4:1-22697252\|-	9372900	9400638	+	27739		NCBI_chr7_b31:19972500-20000251	19972500	20000251	AC099342.5:1-27752\|+	1	27752	+	27752		27668	27718/27753 (99%)	15/27753 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20426729	20542756	GA_x5HB7VCL79P_4:1-22697252\|-	9256872	9372899	+	116028		NCBI_chr7_b31:20000252-20116266	20000252	20116266	AC004130.1:1-116015\|+	1	116015	+	116015		115540	115857/116064 (99%)	85/116064 (0%)
CRA_TCAGchr7.v1:20542757-20576464	20542757	20576464					33708		NCBI_chr7_b31:20116267-20149992	20116267	20149992					33726
CRA_TCAGchr7.v1:7102376-29799627	20576465	20678595	GA_x5HB7VCL79P_4:1-22697252\|-	9121033	9223163	+	102131		NCBI_chr7_b31:20116267-20253883	20149993	20252116	AC003091.1:1-137617\|+	33727	135850	+	102124		101870	102042/102144 (99%)	33/102144 (0%)
VARIATION	20678596	20681676					3081	VARIATION	VARIATION	20252117	20254968					2852	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	20681677	20696890	GA_x5HB7VCL79P_4:1-22697252\|-	9102738	9117951	+	15214		NCBI_chr7_b31:20253884-20270183	20254969	20270183	AC007095.4:1-16300\|+	1086	16300	+	15215		15176	15198/15215 (99%)	1/15215 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20696891	20697708	GA_x5HB7VCL79P_4:1-22697252\|-	9101920	9102737	+	818		NCBI_chr7_b31:20270184-20349594	20270184	20271000	AC002486.1:1-79411\|+	1	817	+	817		766	801/821 (97%)	7/821 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20697707	20721343	GA_x5HB7VCL79P_4:1-22697252\|-	9078285	9101921	+	23637		NCBI_chr7_b31:20270184-20349594	20271000	20294635	AC002486.1:1-79411\|+	817	24452	+	23636		23620	23631/23637 (99%)	1/23637 (0%)
UNMATCHED	20721344	20721366					23	UNMATCHED	DELETION	20294635	20294635					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	20721367	20775399	GA_x5HB7VCL79P_4:1-22697252\|-	9024229	9078261	+	54033		NCBI_chr7_b31:20270184-20349594	20294635	20348682	AC002486.1:1-79411\|+	24452	78499	+	54048		53829	53966/54053 (99%)	25/54053 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20775369	20776291	GA_x5HB7VCL79P_4:1-22697252\|-	9023337	9024259	+	923		NCBI_chr7_b31:20270184-20349594	20348672	20349594	AC002486.1:1-79411\|+	78489	79411	+	923		919	921/923 (99%)	0/923 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20776292	20791761	GA_x5HB7VCL79P_4:1-22697252\|-	9007867	9023336	+	15470		NCBI_chr7_b31:20349595-20469563	20349595	20365069	AC005060.3:1-119969\|+	1	15475	+	15475		15332	15417/15477 (99%)	9/15477 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20791630	20896295	GA_x5HB7VCL79P_4:1-22697252\|-	8903333	9007998	+	104666		NCBI_chr7_b31:20349595-20469563	20364961	20469563	AC005060.3:1-119969\|+	15367	119969	+	104603		103316	104245/104724 (99%)	179/104724 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20896296	20988731	GA_x5HB7VCL79P_4:1-22697252\|-	8810897	8903332	+	92436		NCBI_chr7_b31:20469564-20561999	20469564	20561999	AC005251.1:1-92436\|+	1	92436	+	92436		92226	92362/92443 (99%)	14/92443 (0%)
CRA_TCAGchr7.v1:7102376-29799627	20988732	21054973	GA_x5HB7VCL79P_4:1-22697252\|-	8744655	8810896	+	66242		NCBI_chr7_b31:20562000-20628232	20562000	20628232	AC007090.3:1-66233\|+	1	66233	+	66233		66111	66187/66243 (99%)	11/66243 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21054974	21115584	GA_x5HB7VCL79P_4:1-22697252\|-	8684044	8744654	+	60611		NCBI_chr7_b31:20628233-20688855	20628233	20688855	AC080068.6:1-60623\|+	1	60623	+	60623		60395	60543/60631 (99%)	28/60631 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21115585	21168543	GA_x5HB7VCL79P_4:1-22697252\|-	8631085	8684043	+	52959		NCBI_chr7_b31:20688856-20836907	20688856	20741817	AC006481.3:2001-150052\|-	97091	150052	+	52962		52855	52922/52969 (99%)	17/52969 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21168532	21263629	GA_x5HB7VCL79P_4:1-22697252\|-	8535999	8631096	+	95098		NCBI_chr7_b31:20688856-20836907	20741805	20836907	AC006481.3:2001-150052\|-	2001	97103	+	95103		94874	95022/95115 (99%)	29/95115 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21263630	21278443	GA_x5HB7VCL79P_4:1-22697252\|-	8521185	8535998	+	14814		NCBI_chr7_b31:20836908-20851718	20836908	20851718	AC093649.4:1-14811\|+	1	14811	+	14811		14779	14804/14814 (99%)	3/14814 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21278444	21319442	GA_x5HB7VCL79P_4:1-22697252\|-	8480186	8521184	+	40999		NCBI_chr7_b31:20851719-20935416	20851719	20892739	AC078791.8:1-83698\|+	1	41021	+	41021		40880	40970/41025 (99%)	30/41025 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21314621	21362119	GA_x5HB7VCL79P_4:1-22697252\|-	8437509	8485007	+	47499		NCBI_chr7_b31:20851719-20935416	20887916	20935416	AC078791.8:1-83698\|+	36198	83698	+	47501		47218	47395/47517 (99%)	34/47517 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21362120	21438320	GA_x5HB7VCL79P_4:1-22697252\|-	8361308	8437508	+	76201		NCBI_chr7_b31:20935417-21093294	20935417	21011609	AC005094.1:1-157878\|+	1	76193	+	76193		75816	76058/76220 (99%)	46/76220 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21438301	21503167	GA_x5HB7VCL79P_4:1-22697252\|-	8296461	8361327	+	64867		NCBI_chr7_b31:20935417-21093294	21011558	21076442	AC005094.1:1-157878\|+	76142	141026	+	64885		64616	64782/64893 (99%)	34/64893 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21503136	21520004	GA_x5HB7VCL79P_4:1-22697252\|-	8279624	8296492	+	16869		NCBI_chr7_b31:20935417-21093294	21076439	21093294	AC005094.1:1-157878\|+	141023	157878	+	16856		16764	16830/16871 (99%)	17/16871 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21520005	21654163	GA_x5HB7VCL79P_4:1-22697252\|-	8145465	8279623	+	134159		NCBI_chr7_b31:21093295-21227464	21093295	21227464	AC004595.1:1-134170\|+	1	134170	+	134170		133957	134091/134180 (99%)	31/134180 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21654164	21692751	GA_x5HB7VCL79P_4:1-22697252\|-	8106877	8145464	+	38588		NCBI_chr7_b31:21227465-21266051	21227465	21266051	AC102952.3:1-38587\|+	1	38587	+	38587		38546	38575/38589 (99%)	3/38589 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21692752	21773578	GA_x5HB7VCL79P_4:1-22697252\|-	8026050	8106876	+	80827		NCBI_chr7_b31:21266052-21346860	21266052	21346860	AC073102.2:1-80809\|+	1	80809	+	80809		80561	80725/80834 (99%)	32/80834 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21773579	21803882	GA_x5HB7VCL79P_4:1-22697252\|-	7995746	8026049	+	30304		NCBI_chr7_b31:21346861-21377160	21346861	21377160	AC013481.4:1-30300\|+	1	30300	+	30300		30252	30283/30304 (99%)	4/30304 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21803883	21876897	GA_x5HB7VCL79P_4:1-22697252\|-	7922731	7995745	+	73015		NCBI_chr7_b31:21377161-21450191	21377161	21450191	AC005078.1:1-73031\|+	1	73031	+	73031		72629	72857/73045 (99%)	44/73045 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21876898	21987194	GA_x5HB7VCL79P_4:1-22697252\|-	7812434	7922730	+	110297		NCBI_chr7_b31:21450192-21560506	21450192	21560506	AC004002.1:1-110315\|+	1	110315	+	110315		109738	110119/110350 (99%)	88/110350 (0%)
CRA_TCAGchr7.v1:7102376-29799627	21987195	22011105	GA_x5HB7VCL79P_4:1-22697252\|-	7788523	7812433	+	23911		NCBI_chr7_b31:21560507-21607133	21560507	21584399	AC099653.5:1-46627\|+	1	23893	+	23893		23812	23878/23914 (99%)	24/23914 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22011101	22021716	GA_x5HB7VCL79P_4:1-22697252\|-	7777912	7788527	+	10616		NCBI_chr7_b31:21560507-21607133	21584344	21594983	AC099653.5:1-46627\|+	23838	34477	+	10640		10536	10603/10640 (99%)	24/10640 (0%)
DELETION	22021701	22021716					0	DELETION	UNMATCHED	21594984	21594992					23	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	22021701	22033846	GA_x5HB7VCL79P_4:1-22697252\|-	7765782	7777927	+	12146		NCBI_chr7_b31:21560507-21607133	21594993	21607133	AC099653.5:1-46627\|+	34487	46627	+	12141		12095	12129/12148 (99%)	9/12148 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22033847	22060642	GA_x5HB7VCL79P_4:1-22697252\|-	7738986	7765781	+	26796		NCBI_chr7_b31:21607134-21633929	21607134	21633929	AC074379.5:1-26796\|+	1	26796	+	26796		26690	26768/26801 (99%)	10/26801 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22060643	22273798	GA_x5HB7VCL79P_4:1-22697252\|-	7525830	7738985	+	213156		NCBI_chr7_b31:21633930-22047180	21633930	21847119	AC005079.6:1-413251\|+	1	213190	+	213190		212618	212994/213210 (99%)	74/213210 (0%)
DELETION	22273754	22273798					0	DELETION	UNMATCHED	21847120	21847182					106	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	22273754	22318954	GA_x5HB7VCL79P_4:1-22697252\|-	7480674	7525874	+	45201		NCBI_chr7_b31:21633930-22047180	21847183	21892384	AC005079.6:1-413251\|+	213254	258455	+	45202		45110	45165/45205 (99%)	7/45205 (0%)
VARIATION	22318955	22319102					148	VARIATION	VARIATION	21892385	21892504					120	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	22319103	22473774	GA_x5HB7VCL79P_4:1-22697252\|-	7325854	7480525	+	154672		NCBI_chr7_b31:21633930-22047180	21892505	22047180	AC005079.6:1-413251\|+	258576	413251	+	154676		154284	154558/154697 (99%)	46/154697 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22473775	22489387	GA_x5HB7VCL79P_4:1-22697252\|-	7310241	7325853	+	15613		NCBI_chr7_b31:22047181-22062794	22047181	22062794	AC099759.4:1-15614\|+	1	15614	+	15614		15552	15594/15616 (99%)	5/15616 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22489388	22505708	GA_x5HB7VCL79P_4:1-22697252\|-	7293920	7310240	+	16321		NCBI_chr7_b31:22062795-22177422	22062795	22079117	AC005061.2:1-114628\|+	1	16323	+	16323		16296	16315/16324 (99%)	4/16324 (0%)
UNMATCHED	22505709	22507665					1957	UNMATCHED	DELETION	22079115	22079117					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	22507666	22601457	GA_x5HB7VCL79P_4:1-22697252\|-	7198171	7291962	+	93792		NCBI_chr7_b31:22062795-22177422	22079115	22172922	AC005061.2:1-114628\|+	16321	110128	+	93808		93610	93742/93814 (99%)	28/93814 (0%)
VARIATION	22601458	22682254					80797	VARIATION	VARIATION	22172923	22216247					43325	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	22682255	22841608	GA_x5HB7VCL79P_4:1-22697252\|-	6958020	7117373	+	159354		NCBI_chr7_b31:22177423-22375589	22216248	22375589	AC002480.1:1-198167\|+	38826	198167	+	159342		158802	159157/159377 (99%)	58/159377 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22841609	22851698	GA_x5HB7VCL79P_4:1-22697252\|-	6947930	6958019	+	10090		NCBI_chr7_b31:22375590-22397865	22375590	22385677	AC091800.4:1-22276\|+	1	10088	+	10088		10048	10077/10091 (99%)	4/10091 (0%)
DELETION	22851278	22851698					0	DELETION	UNMATCHED	22385678	22390804					5546	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	22851278	22858338	GA_x5HB7VCL79P_4:1-22697252\|-	6941290	6948350	+	7061		NCBI_chr7_b31:22375590-22397865	22390805	22397865	AC091800.4:1-22276\|+	15216	22276	+	7061		7053	7057/7061 (99%)	0/7061 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22858339	22947546	GA_x5HB7VCL79P_4:1-22697252\|-	6852082	6941289	+	89208		NCBI_chr7_b31:22397866-22487057	22397866	22487057	AC073072.11:1-89192\|+	1	89192	+	89192		88947	89118/89229 (99%)	58/89229 (0%)
UNMATCHED	22947547	22947548					2	UNMATCHED	DELETION	22487057	22487058					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	22947549	22953007	GA_x5HB7VCL79P_4:1-22697252\|-	6846621	6852079	+	5459	INVERSION	NCBI_chr7_b31:22487058-22648996	22487058	22492516	AC005682.2:201-162139\|-	156681	162139	-	5459	INVERSION	5459	5459/5459 (100%)	0/5459 (0%)
CRA_TCAGchr7.v1:7102376-29799627	22953008	22984332	GA_x5HB7VCL79P_4:1-22697252\|-	6815296	6846620	+	31325		NCBI_chr7_b31:22487058-22648996	22492517	22523845	AC005682.2:201-162139\|-	125352	156680	+	31329		31216	31284/31332 (99%)	10/31332 (0%)
UNMATCHED	22984333	22984798					466	UNMATCHED	DELETION	22523586	22523845					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	22984799	23110212	GA_x5HB7VCL79P_4:1-22697252\|-	6689416	6814829	+	125414		NCBI_chr7_b31:22487058-22648996	22523586	22648996	AC005682.2:201-162139\|-	201	125611	+	125411		124961	125273/125440 (99%)	55/125440 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23110213	23194268	GA_x5HB7VCL79P_4:1-22697252\|-	6605360	6689415	+	84056		NCBI_chr7_b31:22648997-22825053	22648997	22733064	AC006039.3:1-176057\|+	1	84068	+	84068		83546	83873/84095 (99%)	66/84095 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23194046	23286284	GA_x5HB7VCL79P_4:1-22697252\|-	6513344	6605582	+	92239		NCBI_chr7_b31:22648997-22825053	22732814	22825053	AC006039.3:1-176057\|+	83818	176057	+	92240		92023	92149/92245 (99%)	11/92245 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23286285	23306613	GA_x5HB7VCL79P_4:1-22697252\|-	6493015	6513343	+	20329		NCBI_chr7_b31:22825054-22845374	22825054	22845374	AC073992.3:1-20321\|+	1	20321	+	20321		20157	20265/20338 (99%)	26/20338 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23306614	23476147	GA_x5HB7VCL79P_4:1-22697252\|-	6323481	6493014	+	169534		NCBI_chr7_b31:22845375-23014913	22845375	23014913	AC005082.3:1-169539\|+	1	169539	+	169539		169365	169487/169549 (99%)	25/169549 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23476148	23578786	GA_x5HB7VCL79P_4:1-22697252\|-	6220842	6323480	+	102639		NCBI_chr7_b31:23014914-23117585	23014914	23117585	AC021876.5:1-102672\|+	1	102672	+	102672		102416	102576/102676 (99%)	41/102676 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23578787	23631171	GA_x5HB7VCL79P_4:1-22697252\|-	6168457	6220841	+	52385		NCBI_chr7_b31:23117586-23169964	23117586	23169964	AC079780.6:1-52379\|+	1	52379	+	52379		52236	52336/52391 (99%)	18/52391 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23631172	23654520	GA_x5HB7VCL79P_4:1-22697252\|-	6145108	6168456	+	23349		NCBI_chr7_b31:23169965-23240640	23169965	23193306	AC023105.7:1-70676\|+	1	23342	+	23342		23234	23314/23354 (99%)	17/23354 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23654486	23701829	GA_x5HB7VCL79P_4:1-22697252\|-	6097799	6145142	+	47344		NCBI_chr7_b31:23169965-23240640	23193298	23240640	AC023105.7:1-70676\|+	23334	70676	+	47343		47269	47318/47347 (99%)	7/47347 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23701830	23851472	GA_x5HB7VCL79P_4:1-22697252\|-	5948156	6097798	+	149643		NCBI_chr7_b31:23240641-23390309	23240641	23390309	AC006026.2:1-149669\|+	1	149669	+	149669		149200	149513/149686 (99%)	60/149686 (0%)
CRA_TCAGchr7.v1:7102376-29799627	23851473	23941443	GA_x5HB7VCL79P_4:1-22697252\|-	5858185	5948155	+	89971		NCBI_chr7_b31:23390310-23480289	23390310	23480289	AC008176.3:1-89980\|+	1	89980	+	89980		89576	89830/89994 (99%)	37/89994 (0%)
CRA_TCAGchr7.v1:23941444-23984438	23941444	23984438					42995		NCBI_chr7_b31:23480290-23523257	23480290	23523257					42968
CRA_TCAGchr7.v1:7102376-29799627	23984439	23994495	GA_x5HB7VCL79P_4:1-22697252\|-	5805133	5815189	+	10057		NCBI_chr7_b31:23480290-23583655	23523258	23533311	AC003087.2:1-103366\|+	42969	53022	+	10054		10016	10044/10057 (99%)	3/10057 (0%)
UNMATCHED	23994496	23994546					51	UNMATCHED	DELETION	23533302	23533311					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	23994547	24044900	GA_x5HB7VCL79P_4:1-22697252\|-	5754728	5805081	+	50354		NCBI_chr7_b31:23480290-23583655	23533302	23583655	AC003087.2:1-103366\|+	53013	103366	+	50354		50157	50286/50365 (99%)	22/50365 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24044901	24164114	GA_x5HB7VCL79P_4:1-22697252\|-	5635514	5754727	+	119214		NCBI_chr7_b31:23583656-23702869	23583656	23702869	AC009508.3:1-119214\|+	1	119214	+	119214		119033	119152/119226 (99%)	24/119226 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24164115	24272089	GA_x5HB7VCL79P_4:1-22697252\|-	5527539	5635513	+	107975		NCBI_chr7_b31:23702870-23810851	23702870	23810851	AC009308.3:1-107982\|+	1	107982	+	107982		107803	107917/107986 (99%)	15/107986 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24272090	24457405	GA_x5HB7VCL79P_4:1-22697252\|-	5342223	5527538	+	185316		NCBI_chr7_b31:23810852-23996167	23810852	23996167	AC004485.2:1-185316\|+	1	185316	+	185316		184318	184968/185378 (99%)	124/185378 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24457406	24458278	GA_x5HB7VCL79P_4:1-22697252\|-	5341350	5342222	+	873		NCBI_chr7_b31:23996168-23997040	23996168	23997040	AC005097.1:1-873\|+	1	873	+	873		871	872/873 (99%)	0/873 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24458279	24539325	GA_x5HB7VCL79P_4:1-22697252\|-	5260303	5341349	+	81047		NCBI_chr7_b31:23997041-24078071	23997041	24078071	AC003044.1:1-81031\|+	1	81031	+	81031		80822	80955/81053 (99%)	28/81053 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24539326	24648516	GA_x5HB7VCL79P_4:1-22697252\|-	5151112	5260302	+	109191		NCBI_chr7_b31:24078072-24187260	24078072	24187260	AC002530.1:1-109189\|+	1	109189	+	109189		109015	109130/109210 (99%)	40/109210 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24648517	24658827	GA_x5HB7VCL79P_4:1-22697252\|-	5140801	5151111	+	10311		NCBI_chr7_b31:24187261-24197564	24187261	24197564	AC079878.6:1-10304\|+	1	10304	+	10304		10238	10292/10316 (99%)	17/10316 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24658828	24781478	GA_x5HB7VCL79P_4:1-22697252\|-	5018150	5140800	+	122651		NCBI_chr7_b31:24197565-24375459	24197565	24320224	AC005084.2:1-177895\|+	1	122660	+	122660		122417	122570/122678 (99%)	45/122678 (0%)
DELETION	24781462	24781478					0	DELETION	UNMATCHED	24320225	24320530					321	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	24781462	24836385	GA_x5HB7VCL79P_4:1-22697252\|-	4963243	5018166	+	54924		NCBI_chr7_b31:24197565-24375459	24320531	24375459	AC005084.2:1-177895\|+	122967	177895	+	54929		54766	54871/54941 (99%)	29/54941 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24836386	24958199	GA_x5HB7VCL79P_4:1-22697252\|-	4841429	4963242	+	121814		NCBI_chr7_b31:24375460-24497259	24375460	24497259	AC003093.1:1-121800\|+	1	121800	+	121800		121608	121747/121826 (99%)	38/121826 (0%)
CRA_TCAGchr7.v1:7102376-29799627	24958200	25069942	GA_x5HB7VCL79P_4:1-22697252\|-	4729686	4841428	+	111743		NCBI_chr7_b31:24497260-24609001	24497260	24609001	AC004016.1:1-111742\|+	1	111742	+	111742		111557	111691/111755 (99%)	25/111755 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25069943	25075230	GA_x5HB7VCL79P_4:1-22697252\|-	4724398	4729685	+	5288		NCBI_chr7_b31:24609002-24614288	24609002	24614288	AC004239.1:1-5287\|+	1	5287	+	5287		5257	5275/5288 (99%)	1/5288 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25075231	25114601	GA_x5HB7VCL79P_4:1-22697252\|-	4685027	4724397	+	39371		NCBI_chr7_b31:24614289-24704477	24614289	24653656	AC004008.2:1-90189\|+	1	39368	+	39368		39192	39302/39377 (99%)	15/39377 (0%)
DELETION	25114600	25114601					0	DELETION	UNMATCHED	24653657	24653675					19	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	25114600	25147811	GA_x5HB7VCL79P_4:1-22697252\|-	4651817	4685028	+	33212		NCBI_chr7_b31:24614289-24704477	24653676	24686895	AC004008.2:1-90189\|+	39388	72607	+	33220		33060	33167/33224 (99%)	16/33224 (0%)
DELETION	25147800	25147811					0	DELETION	UNMATCHED	24686896	24687212					327	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	25147800	25165067	GA_x5HB7VCL79P_4:1-22697252\|-	4634561	4651828	+	17268		NCBI_chr7_b31:24614289-24704477	24687213	24704477	AC004008.2:1-90189\|+	72925	90189	+	17265		17234	17256/17268 (99%)	3/17268 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25165068	25180827	GA_x5HB7VCL79P_4:1-22697252\|-	4618801	4634560	+	15760		NCBI_chr7_b31:24704478-24720239	24704478	24720239	AC079876.5:1-15762\|+	1	15762	+	15762		15728	15750/15762 (99%)	2/15762 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25180828	25244395	GA_x5HB7VCL79P_4:1-22697252\|-	4555233	4618800	+	63568		NCBI_chr7_b31:24720240-24783788	24720240	24783788	AC004694.1:1-63549\|+	1	63549	+	63549		63333	63485/63577 (99%)	37/63577 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25244396	25267180	GA_x5HB7VCL79P_4:1-22697252\|-	4532448	4555232	+	22785		NCBI_chr7_b31:24783789-24806767	24783789	24806573	AC007487.2:1-22979\|+	1	22785	+	22785		22734	22776/22788 (99%)	6/22788 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25267180	25267306	GA_x5HB7VCL79P_4:1-22697252\|-	4532322	4532448	+	127		NCBI_chr7_b31:24783789-24806767	24806455	24806581	AC007487.2:1-22979\|+	22667	22793	+	127		121	124/127 (97%)	0/127 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25267300	25267610	GA_x5HB7VCL79P_4:1-22697252\|-	4532018	4532328	+	311		NCBI_chr7_b31:24783789-24806767	24806457	24806767	AC007487.2:1-22979\|+	22669	22979	+	311		305	308/311 (99%)	0/311 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25267611	25302988	GA_x5HB7VCL79P_4:1-22697252\|-	4496640	4532017	+	35378		NCBI_chr7_b31:24806768-24969268	24806768	24842158	AC004129.2:1-162501\|+	1	35391	+	35391		35215	35324/35393 (99%)	17/35393 (0%)
VARIATION	25302989	25303037					49	VARIATION	VARIATION	24842159	24842161					3	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	25303038	25304576	GA_x5HB7VCL79P_4:1-22697252\|-	4495052	4496590	+	1539		NCBI_chr7_b31:24806768-24969268	24842162	24843700	AC004129.2:1-162501\|+	35395	36933	+	1539		1537	1538/1539 (99%)	0/1539 (0%)
UNMATCHED	25304577	25304591					15	UNMATCHED	DELETION	24843695	24843700					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	25304592	25356458	GA_x5HB7VCL79P_4:1-22697252\|-	4443170	4495036	+	51867		NCBI_chr7_b31:24806768-24969268	24843695	24895562	AC004129.2:1-162501\|+	36928	88795	+	51868		51621	51764/51877 (99%)	19/51877 (0%)
CRA_TCAGchr7.v1:25356459-25401451	25356459	25401451					44993		NCBI_chr7_b31:24895563-24940794	24895563	24940794					45232
CRA_TCAGchr7.v1:7102376-29799627	25401452	25401567	GA_x5HB7VCL79P_4:1-22697252\|-	4398061	4398176	+	116		NCBI_chr7_b31:24806768-24969268	24940795	24940910	AC004129.2:1-162501\|+	134028	134143	+	116		110	113/116 (97%)	0/116 (0%)
CRA_TCAGchr7.v1:25401568-25406717	25401568	25406717					5150		NCBI_chr7_b31:24940911-24946088	24940911	24946088					5178
CRA_TCAGchr7.v1:7102376-29799627	25406718	25429899	GA_x5HB7VCL79P_4:1-22697252\|-	4369729	4392910	+	23182		NCBI_chr7_b31:24806768-24969268	24946089	24969268	AC004129.2:1-162501\|+	139322	162501	+	23180		23128	23169/23185 (99%)	8/23185 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25429900	25534179	GA_x5HB7VCL79P_4:1-22697252\|-	4265449	4369728	+	104280		NCBI_chr7_b31:24969269-25073560	24969269	25073560	AC003985.2:1-104292\|+	1	104292	+	104292		103836	104121/104316 (99%)	60/104316 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25534180	25671990	GA_x5HB7VCL79P_4:1-22697252\|-	4127638	4265448	+	137811		NCBI_chr7_b31:25073561-25211381	25073561	25211381	AC005100.2:1-137821\|+	1	137821	+	137821		137608	137753/137828 (99%)	24/137828 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25671991	25711614	GA_x5HB7VCL79P_4:1-22697252\|-	4088014	4127637	+	39624		NCBI_chr7_b31:25211382-25251002	25211382	25251002	AC091705.4:1-39621\|+	1	39621	+	39621		39508	39580/39627 (99%)	9/39627 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25711615	25744697	GA_x5HB7VCL79P_4:1-22697252\|-	4054931	4088013	+	33083		NCBI_chr7_b31:25251003-25345057	25251003	25284059	AC003090.1:1-94055\|+	1	33057	+	33057		32814	32970/33086 (99%)	32/33086 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25744211	25805464	GA_x5HB7VCL79P_4:1-22697252\|-	3994164	4055417	+	61254		NCBI_chr7_b31:25251003-25345057	25283809	25345057	AC003090.1:1-94055\|+	32807	94055	+	61249		61129	61207/61255 (99%)	7/61255 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25805465	25960416	GA_x5HB7VCL79P_4:1-22697252\|-	3839212	3994163	+	154952		NCBI_chr7_b31:25345058-25500021	25345058	25500021	AC005165.1:1-154964\|+	1	154964	+	154964		154781	154910/154974 (99%)	32/154974 (0%)
CRA_TCAGchr7.v1:7102376-29799627	25960417	26061801	GA_x5HB7VCL79P_4:1-22697252\|-	3737827	3839211	+	101385		NCBI_chr7_b31:25500022-25601432	25500022	25601432	AC018706.3:1-101411\|+	1	101411	+	101411		101178	101331/101419 (99%)	42/101419 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26061802	26202152	GA_x5HB7VCL79P_4:1-22697252\|-	3597476	3737826	+	140351		NCBI_chr7_b31:25601433-25741777	25601433	25741777	AC010719.4:1-140345\|+	1	140345	+	140345		140033	140240/140367 (99%)	38/140367 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26202153	26245111	GA_x5HB7VCL79P_4:1-22697252\|-	3554517	3597475	+	42959		NCBI_chr7_b31:25741778-25874134	25741778	25784736	AC004520.2:1-132357\|+	1	42959	+	42959		42920	42945/42960 (99%)	2/42960 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26245061	26310723	GA_x5HB7VCL79P_4:1-22697252\|-	3488905	3554567	+	65663		NCBI_chr7_b31:25741778-25874134	25784685	25850327	AC004520.2:1-132357\|+	42908	108550	+	65643		65308	65522/65671 (99%)	36/65671 (0%)
UNMATCHED	26310724	26310842					119	UNMATCHED	DELETION	25850327	25850327					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	26310843	26334652	GA_x5HB7VCL79P_4:1-22697252\|-	3464976	3488785	+	23810		NCBI_chr7_b31:25741778-25874134	25850327	25874134	AC004520.2:1-132357\|+	108550	132357	+	23808		23783	23799/23810 (99%)	2/23810 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26334653	26426759	GA_x5HB7VCL79P_4:1-22697252\|-	3372869	3464975	+	92107		NCBI_chr7_b31:25874135-25986593	25874135	25966245	AC010677.4:1-112459\|+	1	92111	+	92111		91883	92037/92121 (99%)	24/92121 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26426146	26426862	GA_x5HB7VCL79P_4:1-22697252\|-	3372766	3373482	+	717		NCBI_chr7_b31:25874135-25986593	25965602	25966319	AC010677.4:1-112459\|+	91468	92185	+	718		681	702/718 (97%)	1/718 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26426851	26447140	GA_x5HB7VCL79P_4:1-22697252\|-	3352488	3372777	+	20290		NCBI_chr7_b31:25874135-25986593	25966305	25986593	AC010677.4:1-112459\|+	92171	112459	+	20289		20252	20277/20292 (99%)	5/20292 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26447141	26513331	GA_x5HB7VCL79P_4:1-22697252\|-	3286297	3352487	+	66191		NCBI_chr7_b31:25986594-26052796	25986594	26052796	AC074295.7:1-66203\|+	1	66203	+	66203		65976	66134/66212 (99%)	30/66212 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26513332	26556807	GA_x5HB7VCL79P_4:1-22697252\|-	3242821	3286296	+	43476		NCBI_chr7_b31:26052797-26184353	26052797	26096276	AC004540.1:1-131557\|+	1	43480	+	43480		43343	43434/43485 (99%)	14/43485 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26556767	26644853	GA_x5HB7VCL79P_4:1-22697252\|-	3154775	3242861	+	88087		NCBI_chr7_b31:26052797-26184353	26096262	26184353	AC004540.1:1-131557\|+	43466	131557	+	88092		87979	88051/88093 (99%)	7/88093 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26644854	26768715	GA_x5HB7VCL79P_4:1-22697252\|-	3030913	3154774	+	123862		NCBI_chr7_b31:26184354-26308157	26184354	26308157	AC004947.2:1-123804\|+	1	123804	+	123804		123317	123635/123868 (99%)	70/123868 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26768716	26901944	GA_x5HB7VCL79P_4:1-22697252\|-	2897684	3030912	+	133229		NCBI_chr7_b31:26308158-26441414	26308158	26441414	AC003999.2:1-133257\|+	1	133257	+	133257		132861	133109/133267 (99%)	48/133267 (0%)
CRA_TCAGchr7.v1:7102376-29799627	26901945	27047634	GA_x5HB7VCL79P_4:1-22697252\|-	2751994	2897683	+	145690		NCBI_chr7_b31:26441415-26587126	26441415	26587126	AC011299.3:1-145712\|+	1	145712	+	145712		145456	145617/145718 (99%)	34/145718 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27047635	27059467	GA_x5HB7VCL79P_4:1-22697252\|-	2740161	2751993	+	11833		NCBI_chr7_b31:26587127-26598961	26587127	26598961	AC091698.3:1-11835\|+	1	11835	+	11835		11805	11825/11835 (99%)	2/11835 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27059468	27100160	GA_x5HB7VCL79P_4:1-22697252\|-	2699468	2740160	+	40693		NCBI_chr7_b31:26598962-26699504	26598962	26639646	AC073472.6:1-100543\|+	1	40685	+	40685		40492	40624/40706 (99%)	34/40706 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27099772	27157230	GA_x5HB7VCL79P_4:1-22697252\|-	2642398	2699856	+	57459		NCBI_chr7_b31:26598962-26699504	26639237	26696709	AC073472.6:1-100543\|+	40276	97748	+	57473		57066	57290/57484 (99%)	36/57484 (0%)
VARIATION	27157231	27158464					1234	VARIATION	VARIATION	26696710	26696891					182	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	27158465	27161078	GA_x5HB7VCL79P_4:1-22697252\|-	2638550	2641163	+	2614		NCBI_chr7_b31:26598962-26699504	26696892	26699504	AC073472.6:1-100543\|+	97931	100543	+	2613		2601	2610/2614 (99%)	1/2614 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27161079	27263596	GA_x5HB7VCL79P_4:1-22697252\|-	2536032	2638549	+	102518		NCBI_chr7_b31:26699505-26802021	26699505	26802021	AC004079.1:1-102517\|+	1	102517	+	102517		102275	102430/102530 (99%)	25/102530 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27263597	27270103	GA_x5HB7VCL79P_4:1-22697252\|-	2529525	2536031	+	6507		NCBI_chr7_b31:26802022-26808529	26802022	26808529	AC010990.3:1-6508\|+	1	6508	+	6508		6501	6507/6508 (99%)	1/6508 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27270104	27295988	GA_x5HB7VCL79P_4:1-22697252\|-	2503640	2529524	+	25885		NCBI_chr7_b31:26808530-26937684	26808530	26834398	AC004080.2:1-129155\|+	1	25869	+	25869		25759	25835/25891 (99%)	28/25891 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27293627	27399294	GA_x5HB7VCL79P_4:1-22697252\|-	2400334	2506001	+	105668		NCBI_chr7_b31:26808530-26937684	26832037	26937684	AC004080.2:1-129155\|+	23508	129155	+	105648		105430	105583/105676 (99%)	36/105676 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27399295	27410942	GA_x5HB7VCL79P_4:1-22697252\|-	2388686	2400333	+	11648		NCBI_chr7_b31:26937685-27038405	26937685	26949332	AC004996.1:1-100721\|+	1	11648	+	11648		11519	11603/11652 (99%)	8/11652 (0%)
UNMATCHED	27410943	27411281					339	UNMATCHED	DELETION	26949331	26949332					0	DELETION
CRA_TCAGchr7.v1:7102376-29799627	27411282	27500325	GA_x5HB7VCL79P_4:1-22697252\|-	2299303	2388346	+	89044		NCBI_chr7_b31:26937685-27038405	26949331	27038405	AC004996.1:1-100721\|+	11647	100721	+	89075		88705	88942/89084 (99%)	49/89084 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27500326	27580887	GA_x5HB7VCL79P_4:1-22697252\|-	2218741	2299302	+	80562		NCBI_chr7_b31:27038406-27118970	27038406	27118970	AC004009.1:1-80565\|+	1	80565	+	80565		80472	80533/80569 (99%)	11/80569 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27580888	27610461	GA_x5HB7VCL79P_4:1-22697252\|-	2189167	2218740	+	29574		NCBI_chr7_b31:27118971-27204644	27118971	27148536	AC073150.7:1-85674\|+	1	29566	+	29566		29507	29551/29575 (99%)	10/29575 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27610414	27618507	GA_x5HB7VCL79P_4:1-22697252\|-	2181121	2189214	+	8094		NCBI_chr7_b31:27118971-27204644	27148537	27156629	AC073150.7:1-85674\|+	29567	37659	+	8093		8063	8084/8095 (99%)	3/8095 (0%)
DELETION	27618494	27618507					0	DELETION	UNMATCHED	27156630	27156890					273	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	27618494	27666253	GA_x5HB7VCL79P_4:1-22697252\|-	2133375	2181134	+	47760		NCBI_chr7_b31:27118971-27204644	27156891	27204644	AC073150.7:1-85674\|+	37921	85674	+	47754		47647	47717/47762 (99%)	10/47762 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27666254	27764600	GA_x5HB7VCL79P_4:1-22697252\|-	2035028	2133374	+	98347		NCBI_chr7_b31:27204645-27339997	27204645	27303018	AC007130.2:1-135353\|+	1	98374	+	98374		97668	98142/98431 (99%)	141/98431 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27756655	27801549	GA_x5HB7VCL79P_4:1-22697252\|-	1998079	2042973	+	44895		NCBI_chr7_b31:27204645-27339997	27295079	27339997	AC007130.2:1-135353\|+	90435	135353	+	44919		44485	44768/44946 (99%)	78/44946 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27801550	27887233	GA_x5HB7VCL79P_4:1-22697252\|-	1912395	1998078	+	85684		NCBI_chr7_b31:27339998-27450332	27339998	27425695	AC005091.1:1-110335\|+	1	85698	+	85698		85465	85619/85708 (99%)	34/85708 (0%)
DELETION	27887194	27887233					0	DELETION	UNMATCHED	27425696	27426003					346	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	27887194	27911521	GA_x5HB7VCL79P_4:1-22697252\|-	1888107	1912434	+	24328		NCBI_chr7_b31:27339998-27450332	27426004	27450332	AC005091.1:1-110335\|+	86007	110335	+	24329		24300	24317/24329 (99%)	1/24329 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27911522	27968246	GA_x5HB7VCL79P_4:1-22697252\|-	1831382	1888106	+	56725		NCBI_chr7_b31:27450333-27574023	27450333	27507046	AC004549.1:1-123691\|+	1	56714	+	56714		56607	56689/56726 (99%)	13/56726 (0%)
DELETION	27968240	27968246					0	DELETION	UNMATCHED	27507047	27507059					18	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	27968240	27992860	GA_x5HB7VCL79P_4:1-22697252\|-	1806768	1831388	+	24621		NCBI_chr7_b31:27450333-27574023	27507060	27531681	AC004549.1:1-123691\|+	56728	81349	+	24622		24595	24611/24622 (99%)	1/24622 (0%)
CRA_TCAGchr7.v1:7102376-29799627	27992851	28035233	GA_x5HB7VCL79P_4:1-22697252\|-	1764395	1806777	+	42383		NCBI_chr7_b31:27450333-27574023	27531644	27574023	AC004549.1:1-123691\|+	81312	123691	+	42380		42311	42358/42385 (99%)	7/42385 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28035234	28052187	GA_x5HB7VCL79P_4:1-22697252\|-	1747441	1764394	+	16954		NCBI_chr7_b31:27574024-27651925	27574024	27590982	AC004007.1:1-77902\|+	1	16959	+	16959		16911	16940/16959 (99%)	5/16959 (0%)
VARIATION	28052188	28052189					2	VARIATION	VARIATION	27590983	27591195					213	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	28052190	28112909	GA_x5HB7VCL79P_4:1-22697252\|-	1686719	1747438	+	60720		NCBI_chr7_b31:27574024-27651925	27591196	27651925	AC004007.1:1-77902\|+	17173	77902	+	60730		60605	60683/60731 (99%)	12/60731 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28112910	28303561	GA_x5HB7VCL79P_4:1-22697252\|-	1496067	1686718	+	190652		NCBI_chr7_b31:27651926-27842567	27651926	27842567	AC004885.2:1-190642\|+	1	190642	+	190642		189982	190411/190685 (99%)	76/190685 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28303562	28313288	GA_x5HB7VCL79P_4:1-22697252\|-	1486340	1496066	+	9727		NCBI_chr7_b31:27842568-27979543	27842568	27852293	AC005017.1:1-136976\|+	1	9726	+	9726		9692	9715/9728 (99%)	3/9728 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28313230	28317557	GA_x5HB7VCL79P_4:1-22697252\|-	1482071	1486398	+	4328		NCBI_chr7_b31:27842568-27979543	27852257	27856584	AC005017.1:1-136976\|+	9690	14017	+	4328		4322	4325/4328 (99%)	0/4328 (0%)
DELETION	28317554	28317557					0	DELETION	UNMATCHED	27856585	27856944					362	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	28317554	28398198	GA_x5HB7VCL79P_4:1-22697252\|-	1401430	1482074	+	80645		NCBI_chr7_b31:27842568-27979543	27856945	27937585	AC005017.1:1-136976\|+	14378	95018	+	80641		80276	80497/80658 (99%)	30/80658 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28398199	28440144	GA_x5HB7VCL79P_4:1-22697252\|-	1359484	1401429	+	41946		NCBI_chr7_b31:27842568-27979543	27937585	27979543	AC005017.1:1-136976\|+	95018	136976	+	41959		41862	41921/41960 (99%)	15/41960 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28440145	28544391	GA_x5HB7VCL79P_4:1-22697252\|-	1255237	1359483	+	104247		NCBI_chr7_b31:27979544-28109812	27979544	28083816	AC006367.3:1-130269\|+	1	104273	+	104273		103836	104098/104285 (99%)	50/104285 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28544387	28570380	GA_x5HB7VCL79P_4:1-22697252\|-	1229248	1255241	+	25994		NCBI_chr7_b31:27979544-28109812	28083811	28109812	AC006367.3:1-130269\|+	104268	130269	+	26002		25856	25939/26002 (99%)	8/26002 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28570381	28596094	GA_x5HB7VCL79P_4:1-22697252\|-	1203534	1229247	+	25714		NCBI_chr7_b31:28109813-28135523	28109813	28135523	AC006980.3:1-25711\|+	1	25711	+	25711		25657	25693/25714 (99%)	3/25714 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28596095	28739805	GA_x5HB7VCL79P_4:1-22697252\|-	1059823	1203533	+	143711		NCBI_chr7_b31:28135524-28279201	28135524	28279201	AC003074.3:1-143678\|+	1	143678	+	143678		143120	143504/143728 (99%)	67/143728 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28739806	28746226	GA_x5HB7VCL79P_4:1-22697252\|-	1053402	1059822	+	6421		NCBI_chr7_b31:28279202-28285607	28279202	28285607	AC006331.3:1-6406\|+	1	6406	+	6406		6325	6383/6421 (99%)	15/6421 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28746227	28923272	GA_x5HB7VCL79P_4:1-22697252\|-	876356	1053401	+	177046		NCBI_chr7_b31:28285608-28462613	28285608	28462613	AC005105.3:1-177006\|+	1	177006	+	177006		176507	176855/177063 (99%)	74/177063 (0%)
CRA_TCAGchr7.v1:7102376-29799627	28923273	28950786	GA_x5HB7VCL79P_4:1-22697252\|-	848842	876355	+	27514		NCBI_chr7_b31:28462614-28658329	28462614	28490127	AC005013.2:1-195716\|+	1	27514	+	27514		27438	27487/27516 (99%)	4/27516 (0%)
VARIATION	28950787	28951344					558	VARIATION	VARIATION	28490128	28490687					560	VARIATION
CRA_TCAGchr7.v1:7102376-29799627	28951345	29059179	GA_x5HB7VCL79P_4:1-22697252\|-	740449	848283	+	107835		NCBI_chr7_b31:28462614-28658329	28490688	28598510	AC005013.2:1-195716\|+	28075	135897	+	107823		107244	107618/107877 (99%)	96/107877 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29059143	29118983	GA_x5HB7VCL79P_4:1-22697252\|-	680645	740485	+	59841		NCBI_chr7_b31:28462614-28658329	28598495	28658329	AC005013.2:1-195716\|+	135882	195716	+	59835		59577	59742/59852 (99%)	28/59852 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29118984	29230437	GA_x5HB7VCL79P_4:1-22697252\|-	569191	680644	+	111454		NCBI_chr7_b31:28658330-28769811	28658330	28769811	AC005162.1:1-111482\|+	1	111482	+	111482		110811	111256/111516 (99%)	96/111516 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29230438	29265268	GA_x5HB7VCL79P_4:1-22697252\|-	534360	569190	+	34831		NCBI_chr7_b31:28769812-28804647	28769812	28804647	AC007096.3:1-34836\|+	1	34836	+	34836		34785	34821/34837 (99%)	7/34837 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29265269	29301037	GA_x5HB7VCL79P_4:1-22697252\|-	498591	534359	+	35769		NCBI_chr7_b31:28804648-28865988	28804648	28840409	AC005232.1:1-61341\|+	1	35762	+	35762		35639	35726/35773 (99%)	15/35773 (0%)
DELETION	29301037	29301037					0	DELETION	UNMATCHED	28840410	28840434					24	UNMATCHED
CRA_TCAGchr7.v1:7102376-29799627	29301037	29326597	GA_x5HB7VCL79P_4:1-22697252\|-	473031	498591	+	25561		NCBI_chr7_b31:28804648-28865988	28840435	28865988	AC005232.1:1-61341\|+	35788	61341	+	25554		25486	25534/25562 (99%)	9/25562 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29326598	29476640	GA_x5HB7VCL79P_4:1-22697252\|-	322988	473030	+	150043		NCBI_chr7_b31:28865989-29016009	28865989	29016009	AC004593.1:1-150021\|+	1	150021	+	150021		149398	149813/150083 (99%)	102/150083 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29476641	29603951	GA_x5HB7VCL79P_4:1-22697252\|-	195677	322987	+	127311		NCBI_chr7_b31:29016010-29143323	29016010	29143323	AC004417.1:1-127314\|+	1	127314	+	127314		126951	127192/127338 (99%)	51/127338 (0%)
CRA_TCAGchr7.v1:29603952-29654257	29603952	29654257					50306		NCBI_chr7_b31:29143324-29193617	29143324	29193617					50294
CRA_TCAGchr7.v1:7102376-29799627	29654258	29683712	GA_x5HB7VCL79P_4:1-22697252\|-	115916	145370	+	29455		NCBI_chr7_b31:29143324-29300215	29193618	29223082	AC007255.4:1-156892\|+	50295	79759	+	29465		29271	29395/29479 (99%)	38/29479 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29683587	29760815	GA_x5HB7VCL79P_4:1-22697252\|-	38813	116041	+	77229		NCBI_chr7_b31:29143324-29300215	29222997	29300215	AC007255.4:1-156892\|+	79674	156892	+	77219		76795	77056/77237 (99%)	26/77237 (0%)
CRA_TCAGchr7.v1:7102376-29799627	29760816	29797992	GA_x5HB7VCL79P_4:1-22697252\|-	1636	38812	+	37177		NCBI_chr7_b31:29300216-29472588	29300216	29337385	AC007276.3:1-172373\|+	1	37170	+	37170		36710	36982/37199 (99%)	51/37199 (0%)
CRA_TCAGchr7.v1:29797993-29798209	29797993	29798209					217		NCBI_chr7_b31:29337386-29337906	29337386	29337906					521
CRA_TCAGchr7.v1:7102376-29799627	29798210	29799627	GA_x5HB7VCL79P_4:1-22697252\|-	1	1418	+	1418		NCBI_chr7_b31:29300216-29472588	29337907	29339324	AC007276.3:1-172373\|+	37692	39109	+	1418		1374	1396/1418 (98%)	0/1418 (0%)
CRA_TCAGchr7.v1:29799628-29859417	29799628	29859417	AC007276.3:39110-98899\|+	39110	98899	+	59790		NCBI_chr7_b31:29300216-29472588	29339325	29399114	AC007276.3:1-172373\|+	39110	98899	+	59790		59790	59790/59790 (100%)	0/59790 (0%)
CRA_TCAGchr7.v1:29859418-32673246	29859418	29932913	GA_x5HB7VCL779_3:133858-2947686\|-	2874191	2947686	+	73496		NCBI_chr7_b31:29300216-29472588	29399115	29472588	AC007276.3:1-172373\|+	98900	172373	+	73474		72563	73159/73525 (99%)	80/73525 (0%)
CRA_TCAGchr7.v1:29859418-32673246	29932914	29946747	GA_x5HB7VCL779_3:133858-2947686\|-	2860357	2874190	+	13834		NCBI_chr7_b31:29472589-29486421	29472589	29486421	AC007280.3:1-13833\|+	1	13833	+	13833		13809	13824/13834 (99%)	1/13834 (0%)
CRA_TCAGchr7.v1:29859418-32673246	29946748	30036970	GA_x5HB7VCL779_3:133858-2947686\|-	2770134	2860356	+	90223		NCBI_chr7_b31:29486422-29643542	29486422	29576704	AC004912.2:1-157121\|+	1	90283	+	90283		89821	90078/90285 (99%)	64/90285 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30032851	30103787	GA_x5HB7VCL779_3:133858-2947686\|-	2703317	2774253	+	70937		NCBI_chr7_b31:29486422-29643542	29572585	29643542	AC004912.2:1-157121\|+	86164	157121	+	70958		70556	70794/70967 (99%)	39/70967 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30103788	30244203	GA_x5HB7VCL779_3:133858-2947686\|-	2562901	2703316	+	140416		NCBI_chr7_b31:29643543-29783961	29643543	29783961	AC007285.3:1-140419\|+	1	140419	+	140419		140225	140359/140433 (99%)	31/140433 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30244204	30258496	GA_x5HB7VCL779_3:133858-2947686\|-	2548608	2562900	+	14293		NCBI_chr7_b31:29783962-29951461	29783962	29798243	AC007036.3:1-167500\|+	1	14282	+	14282		13763	14046/14304 (98%)	33/14304 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30257554	30411650	GA_x5HB7VCL779_3:133858-2947686\|-	2395454	2549550	+	154097		NCBI_chr7_b31:29783962-29951461	29797342	29951461	AC007036.3:1-167500\|+	13381	167500	+	154120		153864	154022/154125 (99%)	33/154125 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30411651	30418110	GA_x5HB7VCL779_3:133858-2947686\|-	2388994	2395453	+	6460		NCBI_chr7_b31:29951462-29957921	29951462	29957921	AC009304.2:1-6460\|+	1	6460	+	6460		6456	6458/6460 (99%)	0/6460 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30418111	30530917	GA_x5HB7VCL779_3:133858-2947686\|-	2276187	2388993	+	112807		NCBI_chr7_b31:29957922-30070727	29957922	30070727	AC006978.2:1-112806\|+	1	112806	+	112806		112587	112730/112818 (99%)	23/112818 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30530918	30599487	GA_x5HB7VCL779_3:133858-2947686\|-	2207617	2276186	+	68570		NCBI_chr7_b31:30070728-30139294	30070728	30139294	AC006027.2:1-68567\|+	1	68567	+	68567		68295	68440/68570 (99%)	3/68570 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30599488	30712515	GA_x5HB7VCL779_3:133858-2947686\|-	2094589	2207616	+	113028		NCBI_chr7_b31:30139295-30290724	30139295	30252402	AC005154.1:1-151430\|+	1	113108	+	113108		112331	112810/113144 (99%)	152/113144 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30712148	30750801	GA_x5HB7VCL779_3:133858-2947686\|-	2056303	2094956	+	38654		NCBI_chr7_b31:30139295-30290724	30252083	30290724	AC005154.1:1-151430\|+	112789	151430	+	38642		38535	38605/38655 (99%)	14/38655 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30750802	30756219	GA_x5HB7VCL779_3:133858-2947686\|-	2050885	2056302	+	5418		NCBI_chr7_b31:30290725-30296142	30290725	30296142	AC006969.2:1-5418\|+	1	5418	+	5418		5416	5417/5418 (99%)	0/5418 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30756220	30841766	GA_x5HB7VCL779_3:133858-2947686\|-	1965338	2050884	+	85547		NCBI_chr7_b31:30296143-30423367	30296143	30381700	AC004976.1:1-127225\|+	1	85558	+	85558		85385	85484/85558 (99%)	11/85558 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30841662	30883340	GA_x5HB7VCL779_3:133858-2947686\|-	1923764	1965442	+	41679		NCBI_chr7_b31:30296143-30423367	30381677	30423367	AC004976.1:1-127225\|+	85535	127225	+	41691		41573	41643/41693 (99%)	16/41693 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30883341	30909342	GA_x5HB7VCL779_3:133858-2947686\|-	1897762	1923763	+	26002		NCBI_chr7_b31:30423368-30453498	30423368	30449360	AC006022.1:1-30131\|+	1	25993	+	25993		25515	25788/26011 (99%)	27/26011 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30909291	30913457	GA_x5HB7VCL779_3:133858-2947686\|-	1893647	1897813	+	4167		NCBI_chr7_b31:30423368-30453498	30449331	30453498	AC006022.1:1-30131\|+	25964	30131	+	4168		4145	4159/4168 (99%)	1/4168 (0%)
CRA_TCAGchr7.v1:29859418-32673246	30913458	31055217	GA_x5HB7VCL779_3:133858-2947686\|-	1751887	1893646	+	141760		NCBI_chr7_b31:30453499-30595288	30453499	30595288	AC004691.1:1-141790\|+	1	141790	+	141790		141369	141615/141801 (99%)	52/141801 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31055218	31172797	GA_x5HB7VCL779_3:133858-2947686\|-	1634307	1751886	+	117580		NCBI_chr7_b31:30595289-30722370	30595289	30712867	AC005155.1:1-127082\|+	1	117579	+	117579		117493	117545/117582 (99%)	5/117582 (0%)
DELETION	31172783	31172797					0	DELETION	UNMATCHED	30712868	30713181					327	UNMATCHED
CRA_TCAGchr7.v1:29859418-32673246	31172783	31181971	GA_x5HB7VCL779_3:133858-2947686\|-	1625133	1634321	+	9189		NCBI_chr7_b31:30595289-30722370	30713182	30722370	AC005155.1:1-127082\|+	117894	127082	+	9189		9183	9186/9189 (99%)	0/9189 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31181972	31338668	GA_x5HB7VCL779_3:133858-2947686\|-	1468436	1625132	+	156697		NCBI_chr7_b31:30722371-30879050	30722371	30879050	AC006466.3:1-156680\|+	1	156680	+	156680		156179	156516/156723 (99%)	69/156723 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31338668	31431087	GA_x5HB7VCL779_3:133858-2947686\|-	1376017	1468436	+	92420		NCBI_chr7_b31:30879051-30971461	30879051	30971461	AC006398.2:1-92411\|+	1	92411	+	92411		91823	92192/92451 (99%)	71/92451 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31431088	31551290	GA_x5HB7VCL779_3:133858-2947686\|-	1255814	1376016	+	120203		NCBI_chr7_b31:30971462-31091690	30971462	31091690	AC006380.2:1-120229\|+	1	120229	+	120229		119452	119885/120243 (99%)	54/120243 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31551291	31625670	GA_x5HB7VCL779_3:133858-2947686\|-	1181434	1255813	+	74380		NCBI_chr7_b31:31091691-31207708	31091691	31166056	AC005090.2:1-116018\|+	1	74366	+	74366		74068	74269/74390 (99%)	34/74390 (0%)
DELETION	31625657	31625670					0	DELETION	UNMATCHED	31166057	31167530					1486	UNMATCHED
CRA_TCAGchr7.v1:29859418-32673246	31625657	31665829	GA_x5HB7VCL779_3:133858-2947686\|-	1141275	1181447	+	40173		NCBI_chr7_b31:31091691-31207708	31167531	31207708	AC005090.2:1-116018\|+	75841	116018	+	40178		39940	40087/40184 (99%)	17/40184 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31665830	31797206	GA_x5HB7VCL779_3:133858-2947686\|-	1009898	1141274	+	131377		NCBI_chr7_b31:31207709-31349017	31207709	31339057	AC006044.2:1-141309\|+	1	131349	+	131349		130686	131121/131401 (99%)	76/131401 (0%)
UNMATCHED	31797207	31797782					576	UNMATCHED	DELETION	31339057	31339058					0	DELETION
CRA_TCAGchr7.v1:29859418-32673246	31797783	31807743	GA_x5HB7VCL779_3:133858-2947686\|-	999361	1009321	+	9961		NCBI_chr7_b31:31207709-31349017	31339058	31349017	AC006044.2:1-141309\|+	131350	141309	+	9960		9944	9955/9961 (99%)	1/9961 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31807744	31867668	GA_x5HB7VCL779_3:133858-2947686\|-	939436	999360	+	59925		NCBI_chr7_b31:31349018-31408946	31349018	31408946	AC006325.3:1-59929\|+	1	59929	+	59929		59844	59900/59931 (99%)	8/59931 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31867669	31894641	GA_x5HB7VCL779_3:133858-2947686\|-	912463	939435	+	26973		NCBI_chr7_b31:31408947-31435928	31408947	31435928	AC007093.3:1-26982\|+	1	26982	+	26982		26766	26909/27002 (99%)	49/27002 (0%)
CRA_TCAGchr7.v1:29859418-32673246	31894642	32070917	GA_x5HB7VCL779_3:133858-2947686\|-	736187	912462	+	176276		NCBI_chr7_b31:31435929-31612191	31435929	31612191	AC006377.3:1-176263\|+	1	176263	+	176263		175640	176050/176315 (99%)	91/176315 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32070918	32147107	GA_x5HB7VCL779_3:133858-2947686\|-	659997	736186	+	76190		NCBI_chr7_b31:31612192-31688376	31612192	31688376	AC007033.3:1-76185\|+	1	76185	+	76185		76015	76118/76191 (99%)	7/76191 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32147108	32292730	GA_x5HB7VCL779_3:133858-2947686\|-	514374	659996	+	145623		NCBI_chr7_b31:31688377-31834020	31688377	31834020	AC004931.1:1-145644\|+	1	145644	+	145644		145481	145576/145646 (99%)	25/145646 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32292731	32409441	GA_x5HB7VCL779_3:133858-2947686\|-	397663	514373	+	116711		NCBI_chr7_b31:31834021-31950743	31834021	31950743	AC005589.1:1-116723\|+	1	116723	+	116723		116212	116502/116732 (99%)	30/116732 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32409442	32438653	GA_x5HB7VCL779_3:133858-2947686\|-	368451	397662	+	29212		NCBI_chr7_b31:31950744-32041952	31950744	31979959	AC018637.3:1-91209\|+	1	29216	+	29216		29114	29179/29219 (99%)	10/29219 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32438543	32491100	GA_x5HB7VCL779_3:133858-2947686\|-	316004	368561	+	52558		NCBI_chr7_b31:31950744-32041952	31979894	32032447	AC018637.3:1-91209\|+	29151	81704	+	52554		52247	52429/52566 (99%)	20/52566 (0%)
DELETION	32491082	32491100					0	DELETION	UNMATCHED	32032448	32035389					2959	UNMATCHED
CRA_TCAGchr7.v1:29859418-32673246	32491082	32497637	GA_x5HB7VCL779_3:133858-2947686\|-	309467	316022	+	6556		NCBI_chr7_b31:31950744-32041952	32035390	32041952	AC018637.3:1-91209\|+	84647	91209	+	6563		6531	6552/6563 (99%)	7/6563 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32497638	32557919	GA_x5HB7VCL779_3:133858-2947686\|-	249185	309466	+	60282		NCBI_chr7_b31:32041953-32218248	32041953	32102229	AC018641.3:6765-183060\|-	122784	183060	+	60277		59870	60119/60293 (99%)	27/60293 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32557673	32648363	GA_x5HB7VCL779_3:133858-2947686\|-	158741	249431	+	90691		NCBI_chr7_b31:32041953-32218248	32102035	32192714	AC018641.3:6765-183060\|-	32299	122978	+	90680		90228	90507/90701 (99%)	31/90701 (0%)
CRA_TCAGchr7.v1:29859418-32673246	32647553	32673246	GA_x5HB7VCL779_3:133858-2947686\|-	133858	159551	+	25694		NCBI_chr7_b31:32041953-32218248	32192548	32218248	AC018641.3:6765-183060\|-	6765	32465	+	25701		25504	25622/25705 (99%)	15/25705 (0%)
CRA_TCAGchr7.v1:32673247-32842480	32673247	32817839	AC018633.2:1-169234\|+	1	144593	+	144593		NCBI_chr7_b31:32218249-32362841	32218249	32362841	AC018633.2:1-144593\|+	1	144593	+	144593		144593	144593/144593 (100%)	0/144593 (0%)
CRA_TCAGchr7.v1:32673247-32842480	32817840	32842480	AC018633.2:1-169234\|+	144594	169234	+	24641		NCBI_chr7_b31:32362842-32476669	32362842	32387484	AC018645.4:1-113828\|+	1	24643	+	24643		24464	24572/24650 (99%)	16/24650 (0%)
CRA_TCAGchr7.v1:32842481-32927451	32842481	32927451	AC018645.4:24644-109614\|+	24644	109614	+	84971		NCBI_chr7_b31:32362842-32476669	32387485	32472455	AC018645.4:1-113828\|+	24644	109614	+	84971		84971	84971/84971 (100%)	0/84971 (0%)
CRA_TCAGchr7.v1:32927452-35043431	32927452	32931665	GA_x5HB7VCL78J_3:1-2115980\|+	1	4214	+	4214		NCBI_chr7_b31:32362842-32476669	32472456	32476669	AC018645.4:1-113828\|+	109615	113828	+	4214		4183	4204/4215 (99%)	2/4215 (0%)
CRA_TCAGchr7.v1:32927452-35043431	32931666	33079029	GA_x5HB7VCL78J_3:1-2115980\|+	4215	151578	+	147364		NCBI_chr7_b31:32476670-32624028	32476670	32624028	AC018648.5:1-147359\|+	1	147359	+	147359		147029	147266/147393 (99%)	63/147393 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33079030	33171269	GA_x5HB7VCL78J_3:1-2115980\|+	151579	243818	+	92240		NCBI_chr7_b31:32624029-32716244	32624029	32716244	AC083863.2:1-92216\|+	1	92216	+	92216		91515	91961/92257 (99%)	58/92257 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33171270	33264334	GA_x5HB7VCL78J_3:1-2115980\|+	243819	336883	+	93065		NCBI_chr7_b31:32716245-32809329	32716245	32809329	AC074338.1:1-93085\|+	1	93085	+	93085		92892	93008/93089 (99%)	28/93089 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33264335	33449058	GA_x5HB7VCL78J_3:1-2115980\|+	336884	521607	+	184724		NCBI_chr7_b31:32809330-32994030	32809330	32994030	AC007312.1:952-185652\|-	952	185652	+	184701		184401	184618/184735 (99%)	45/184735 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33449059	33490110	GA_x5HB7VCL78J_3:1-2115980\|+	521608	562659	+	41052		NCBI_chr7_b31:32994031-33035073	32994031	33035073	AC087070.2:551-41593\|-	551	41593	+	41043		40948	41013/41053 (99%)	11/41053 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33490111	33623894	GA_x5HB7VCL78J_3:1-2115980\|+	562660	696443	+	133784		NCBI_chr7_b31:33035074-33168861	33035074	33168861	AC006195.1:16455-150242\|-	16455	150242	+	133788		133648	133740/133792 (99%)	12/133792 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33623895	33670665	GA_x5HB7VCL78J_3:1-2115980\|+	696444	743214	+	46771		NCBI_chr7_b31:33168862-33215625	33168862	33215625	AC078833.4:97183-143946\|-	97183	143946	+	46764		46684	46743/46772 (99%)	9/46772 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33670666	33805633	GA_x5HB7VCL78J_3:1-2115980\|+	743215	878182	+	134968		NCBI_chr7_b31:33215626-33394352	33215626	33350576	AC018664.10:26121-204847\|-	69897	204847	+	134951		134200	134718/135011 (99%)	103/135011 (0%)
DELETION	33805562	33805633					0	DELETION	UNMATCHED	33350577	33350638					132	UNMATCHED
CRA_TCAGchr7.v1:32927452-35043431	33805562	33809198	GA_x5HB7VCL78J_3:1-2115980\|+	878111	881747	+	3637		NCBI_chr7_b31:33215626-33394352	33350639	33354275	AC018664.10:26121-204847\|-	66198	69834	+	3637		3611	3624/3637 (99%)	0/3637 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33809126	33849226	GA_x5HB7VCL78J_3:1-2115980\|+	881675	921775	+	40101		NCBI_chr7_b31:33215626-33394352	33354264	33394352	AC018664.10:26121-204847\|-	26121	66209	+	40089		39836	40009/40112 (99%)	34/40112 (0%)
CRA_TCAGchr7.v1:32927452-35043431	33849227	33885798	GA_x5HB7VCL78J_3:1-2115980\|+	921776	958347	+	36572		NCBI_chr7_b31:33394353-33557575	33394353	33430926	AC008080.1:1-163223\|+	1	36574	+	36574		36403	36517/36591 (99%)	36/36591 (0%)
UNMATCHED	33885799	33886032					234	UNMATCHED	DELETION	33430926	33430926					0	DELETION
CRA_TCAGchr7.v1:32927452-35043431	33886033	33888358	GA_x5HB7VCL78J_3:1-2115980\|+	958582	960907	+	2326		NCBI_chr7_b31:33394353-33557575	33430926	33433250	AC008080.1:1-163223\|+	36574	38898	+	2325		2297	2317/2327 (99%)	3/2327 (0%)
UNMATCHED	33888359	33888378					20	UNMATCHED	DELETION	33433243	33433250					0	DELETION
CRA_TCAGchr7.v1:32927452-35043431	33888379	33996240	GA_x5HB7VCL78J_3:1-2115980\|+	960928	1068789	+	107862		NCBI_chr7_b31:33394353-33557575	33433243	33541092	AC008080.1:1-163223\|+	38891	146740	+	107850		107502	107727/107882 (99%)	52/107882 (0%)
DELETION	33996226	33996240					0	DELETION	UNMATCHED	33541093	33541408					329	UNMATCHED
CRA_TCAGchr7.v1:32927452-35043431	33996226	34012391	GA_x5HB7VCL78J_3:1-2115980\|+	1068775	1084940	+	16166		NCBI_chr7_b31:33394353-33557575	33541409	33557575	AC008080.1:1-163223\|+	147057	163223	+	16167		16095	16139/16168 (99%)	3/16168 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34012392	34166939	GA_x5HB7VCL78J_3:1-2115980\|+	1084941	1239488	+	154548		NCBI_chr7_b31:33557576-33712099	33557576	33712099	AC010002.6:15398-169921\|-	15398	169921	+	154524		154294	154459/154559 (99%)	46/154559 (0%)
CRA_TCAGchr7.v1:34166940-34266273	34166940	34266273					99334		NCBI_chr7_b31:33712100-33816801	33712100	33816801					104702
CRA_TCAGchr7.v1:32927452-35043431	34266274	34274078	GA_x5HB7VCL78J_3:1-2115980\|+	1338823	1346627	+	7805		NCBI_chr7_b31:33712100-33824607	33816802	33824607	AC007350.1:1-112508\|+	104703	112508	+	7806		7755	7786/7807 (99%)	3/7807 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34274079	34323527	GA_x5HB7VCL78J_3:1-2115980\|+	1346628	1396076	+	49449		NCBI_chr7_b31:33824608-33874047	33824608	33874047	AC009262.5:99816-149255\|-	99816	149255	+	49440		49348	49416/49449 (99%)	9/49449 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34323528	34463273	GA_x5HB7VCL78J_3:1-2115980\|+	1396077	1535822	+	139746		NCBI_chr7_b31:33874048-34013803	33874048	34013803	AC005686.1:1-139756\|+	1	139756	+	139756		139513	139668/139773 (99%)	44/139773 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34463274	34505411	GA_x5HB7VCL78J_3:1-2115980\|+	1535823	1577960	+	42138		NCBI_chr7_b31:34013804-34055941	34013804	34055941	AC005582.1:1-42138\|+	1	42138	+	42138		42136	42137/42138 (99%)	0/42138 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34505412	34546592	GA_x5HB7VCL78J_3:1-2115980\|+	1577961	1619141	+	41181		NCBI_chr7_b31:34055942-34097122	34055942	34097122	AC005685.1:1-41181\|+	1	41181	+	41181		41173	41177/41181 (99%)	0/41181 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34546593	34564265	GA_x5HB7VCL78J_3:1-2115980\|+	1619142	1636814	+	17673		NCBI_chr7_b31:34097123-34129146	34097123	34114794	AC005502.1:1-32024\|+	1	17672	+	17672		17632	17655/17673 (99%)	1/17673 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34564247	34578633	GA_x5HB7VCL78J_3:1-2115980\|+	1636796	1651182	+	14387		NCBI_chr7_b31:34097123-34129146	34114755	34129146	AC005502.1:1-32024\|+	17633	32024	+	14392		14325	14370/14395 (99%)	11/14395 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34578634	34617818	GA_x5HB7VCL78J_3:1-2115980\|+	1651183	1690367	+	39185		NCBI_chr7_b31:34129147-34168321	34129147	34168321	AC005490.1:1-39175\|+	1	39175	+	39175		39046	39130/39189 (99%)	18/39189 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34617819	34649183	GA_x5HB7VCL78J_3:1-2115980\|+	1690368	1721732	+	31365		NCBI_chr7_b31:34168322-34199681	34168322	34199681	AC005852.1:1-31360\|+	1	31360	+	31360		31235	31321/31377 (99%)	29/31377 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34649184	34694124	GA_x5HB7VCL78J_3:1-2115980\|+	1721733	1766673	+	44941		NCBI_chr7_b31:34199682-34244632	34199682	34244632	AC005688.1:1-44951\|+	1	44951	+	44951		44863	44924/44955 (99%)	18/44955 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34694125	34731307	GA_x5HB7VCL78J_3:1-2115980\|+	1766674	1803856	+	37183		NCBI_chr7_b31:34244633-34281815	34244633	34281815	AC005491.1:1-37183\|+	1	37183	+	37183		37173	37178/37183 (99%)	0/37183 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34731308	34744970	GA_x5HB7VCL78J_3:1-2115980\|+	1803857	1817519	+	13663		NCBI_chr7_b31:34281816-34320276	34281816	34295478	AC005173.1:1-38461\|+	1	13663	+	13663		13563	13613/13663 (99%)	0/13663 (0%)
DELETION	34744820	34744970					0	DELETION	UNMATCHED	34295479	34295607					278	UNMATCHED
CRA_TCAGchr7.v1:32927452-35043431	34744820	34767874	GA_x5HB7VCL78J_3:1-2115980\|+	1817369	1840423	+	23055		NCBI_chr7_b31:34281816-34320276	34295608	34318665	AC005173.1:1-38461\|+	13793	36850	+	23058		22939	23007/23060 (99%)	7/23060 (0%)
VARIATION	34767875	34771128					3254	VARIATION	VARIATION	34318666	34321561					2896	VARIATION
CRA_TCAGchr7.v1:32927452-35043431	34771129	34808793	GA_x5HB7VCL78J_3:1-2115980\|+	1843678	1881342	+	37665		NCBI_chr7_b31:34320277-34359230	34321562	34359230	AC005493.1:1-38954\|+	1286	38954	+	37669		37534	37618/37672 (99%)	10/37672 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34808794	34847895	GA_x5HB7VCL78J_3:1-2115980\|+	1881343	1920444	+	39102		NCBI_chr7_b31:34359231-34398342	34359231	34398342	AC005680.1:1-39112\|+	1	39112	+	39112		38978	39066/39119 (99%)	24/39119 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34847896	34883697	GA_x5HB7VCL78J_3:1-2115980\|+	1920445	1956246	+	35802		NCBI_chr7_b31:34398343-34434142	34398343	34434142	AC005492.1:1-35800\|+	1	35800	+	35800		35756	35784/35802 (99%)	2/35802 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34883698	34919266	GA_x5HB7VCL78J_3:1-2115980\|+	1956247	1991815	+	35569		NCBI_chr7_b31:34434143-34469711	34434143	34469711	AC005174.1:1-35569\|+	1	35569	+	35569		35557	35563/35569 (99%)	0/35569 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34919267	34937641	GA_x5HB7VCL78J_3:1-2115980\|+	1991816	2010190	+	18375		NCBI_chr7_b31:34469712-34506569	34469712	34488082	AC005862.1:1-36858\|+	1	18371	+	18371		18179	18285/18376 (99%)	6/18376 (0%)
UNMATCHED	34937642	34938506					865	UNMATCHED	DELETION	34488067	34488082					0	DELETION
CRA_TCAGchr7.v1:32927452-35043431	34938507	34957008	GA_x5HB7VCL78J_3:1-2115980\|+	2011056	2029557	+	18502		NCBI_chr7_b31:34469712-34506569	34488067	34506569	AC005862.1:1-36858\|+	18356	36858	+	18503		18267	18403/18514 (99%)	23/18514 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34957009	34994616	GA_x5HB7VCL78J_3:1-2115980\|+	2029558	2067165	+	37608		NCBI_chr7_b31:34506570-34544179	34506570	34544179	AC005853.1:1-37610\|+	1	37610	+	37610		37591	37603/37610 (99%)	2/37610 (0%)
CRA_TCAGchr7.v1:32927452-35043431	34994617	35032062	GA_x5HB7VCL78J_3:1-2115980\|+	2067166	2104611	+	37446		NCBI_chr7_b31:34544180-34581625	34544180	34581625	AC004788.1:1-37446\|+	1	37446	+	37446		37089	37304/37454 (99%)	16/37454 (0%)
CRA_TCAGchr7.v1:32927452-35043431	35032063	35043416	GA_x5HB7VCL78J_3:1-2115980\|+	2104612	2115965	+	11354		NCBI_chr7_b31:34581626-34621154	34581626	34592977	AC004711.1:1-39529\|+	1	11352	+	11352		11336	11350/11354 (99%)	2/11354 (0%)
VARIATION	35043417	35043431					15	VARIATION	VARIATION	34592978	34592993					16	VARIATION
CRA_TCAGchr7.v1:35043432-35073644	35043432	35071592	AC004711.1:11369-41581\|+	11369	39529	+	28161		NCBI_chr7_b31:34581626-34621154	34592994	34621154	AC004711.1:1-39529\|+	11369	39529	+	28161		28161	28161/28161 (100%)	0/28161 (0%)
CRA_TCAGchr7.v1:35043432-35073644	35071593	35073644	AC004711.1:11369-41581\|+	39530	41581	+	2052		NCBI_chr7_b31:34621155-34660213	34621155	34623206	AC005271.1:1-39059\|+	1	2052	+	2052		2052	2052/2052 (100%)	0/2052 (0%)
CRA_TCAGchr7.v1:35073645-35184293	35073645	35110615	AC010085.3:5624-116272\|-	79302	116272	+	36971		NCBI_chr7_b31:34621155-34660213	34623207	34660213	AC005271.1:1-39059\|+	2053	39059	+	37007		36630	36857/37014 (99%)	50/37014 (0%)
CRA_TCAGchr7.v1:35073645-35184293	35110616	35143379	AC010085.3:5624-116272\|-	46538	79301	+	32764		NCBI_chr7_b31:34660214-34693001	34660214	34693001	AC004712.1:1-32788\|+	1	32788	+	32788		32531	32702/32793 (99%)	34/32793 (0%)
CRA_TCAGchr7.v1:35073645-35184293	35143380	35183624	AC010085.3:5624-116272\|-	6293	46537	+	40245		NCBI_chr7_b31:34693002-34734158	34693002	34733229	AC005401.1:1-41157\|+	1	40228	+	40228		39560	39947/40264 (99%)	55/40264 (0%)
VARIATION	35183625	35184293					669	VARIATION	VARIATION	34733230	34739776					6547	VARIATION
CRA_TCAGchr7.v1:35184294-35359268	35184294	35218589	AC006379.2:201-175175\|+	201	34496	+	34296		NCBI_chr7_b31:34734159-34774072	34739777	34774072	AC005400.1:1-39914\|+	5619	39914	+	34296		34296	34296/34296 (100%)	0/34296 (0%)
CRA_TCAGchr7.v1:35184294-35359268	35218590	35233634	AC006379.2:201-175175\|+	34497	49541	+	15045		NCBI_chr7_b31:34774073-34789117	34774073	34789117	AC004800.1:1-15045\|+	1	15045	+	15045		15045	15045/15045 (100%)	0/15045 (0%)
CRA_TCAGchr7.v1:35184294-35359268	35233635	35345855	AC006379.2:201-175175\|+	49542	161762	+	112221		NCBI_chr7_b31:34789118-34901306	34789118	34901306	AC005826.1:1-112189\|+	1	112189	+	112189		112035	112154/112228 (99%)	46/112228 (0%)
CRA_TCAGchr7.v1:35184294-35359268	35345856	35359268	AC006379.2:201-175175\|+	161763	175175	+	13413		NCBI_chr7_b31:34901307-35024429	34901307	34914718	AC009531.11:1-123123\|+	1	13412	+	13412		13391	13410/13414 (99%)	3/13414 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35359269	35406406	GA_x5HB7VCL77B_3:1-8721543\|+	1	47138	+	47138		NCBI_chr7_b31:34901307-35024429	34914719	34961861	AC009531.11:1-123123\|+	13413	60555	+	47143		46916	47065/47154 (99%)	27/47154 (0%)
DELETION	35406388	35406406					0	DELETION	UNMATCHED	34961862	34961866					22	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	35406388	35468965	GA_x5HB7VCL77B_3:1-8721543\|+	47120	109697	+	62578		NCBI_chr7_b31:34901307-35024429	34961867	35024429	AC009531.11:1-123123\|+	60561	123123	+	62563		62353	62497/62581 (99%)	21/62581 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35468966	35536181	GA_x5HB7VCL77B_3:1-8721543\|+	109698	176913	+	67216		NCBI_chr7_b31:35024430-35105460	35024430	35091662	AC007652.1:1-81031\|+	1	67233	+	67233		67031	67155/67239 (99%)	29/67239 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35536135	35549954	GA_x5HB7VCL77B_3:1-8721543\|+	176867	190686	+	13820		NCBI_chr7_b31:35024430-35105460	35091640	35105460	AC007652.1:1-81031\|+	67211	81031	+	13821		13792	13809/13821 (99%)	1/13821 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35549955	35719213	GA_x5HB7VCL77B_3:1-8721543\|+	190687	359945	+	169259		NCBI_chr7_b31:35105461-35274697	35105461	35274697	AC009333.11:10620-179856\|-	10620	179856	+	169237		168934	169153/169267 (99%)	38/169267 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35719214	35723564	GA_x5HB7VCL77B_3:1-8721543\|+	359946	364296	+	4351		NCBI_chr7_b31:35274698-35386573	35274698	35279048	AC018647.4:1-111876\|+	1	4351	+	4351		4337	4344/4351 (99%)	0/4351 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35723478	35831036	GA_x5HB7VCL77B_3:1-8721543\|+	364210	471768	+	107559		NCBI_chr7_b31:35274698-35386573	35278986	35386573	AC018647.4:1-111876\|+	4289	111876	+	107588		106831	107298/107650 (99%)	153/107650 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35831037	35966366	GA_x5HB7VCL77B_3:1-8721543\|+	471769	607098	+	135330		NCBI_chr7_b31:35386574-35521907	35386574	35521907	AC007551.1:1-135334\|+	1	135334	+	135334		135040	135232/135349 (99%)	34/135349 (0%)
CRA_TCAGchr7.v1:35359269-44080811	35966367	36077382	GA_x5HB7VCL77B_3:1-8721543\|+	607099	718114	+	111016		NCBI_chr7_b31:35521908-35632920	35521908	35632920	AC087072.2:1-111013\|+	1	111013	+	111013		110691	110889/111027 (99%)	25/111027 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36077383	36118460	GA_x5HB7VCL77B_3:1-8721543\|+	718115	759192	+	41078		NCBI_chr7_b31:35632921-35693020	35632921	35673995	AC083864.2:95965-156064\|-	114990	156064	+	41075		40855	41006/41087 (99%)	21/41087 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36102270	36137485	GA_x5HB7VCL77B_3:1-8721543\|+	743002	778217	+	35216		NCBI_chr7_b31:35632921-35693020	35657808	35693020	AC083864.2:95965-156064\|-	95965	131177	+	35213		35178	35210/35217 (99%)	5/35217 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36137486	36184654	GA_x5HB7VCL77B_3:1-8721543\|+	778218	825386	+	47169		NCBI_chr7_b31:35693021-35848129	35693021	35740167	AC078841.4:1-155109\|+	1	47147	+	47147		46936	47088/47185 (99%)	54/47185 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36184626	36292686	GA_x5HB7VCL77B_3:1-8721543\|+	825358	933418	+	108061		NCBI_chr7_b31:35693021-35848129	35740113	35848129	AC078841.4:1-155109\|+	47093	155109	+	108017		107495	107834/108073 (99%)	68/108073 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36292687	36386214	GA_x5HB7VCL77B_3:1-8721543\|+	933419	1026946	+	93528		NCBI_chr7_b31:35848130-35989918	35848130	35941687	AC007327.1:1-141789\|+	1	93558	+	93558		93015	93361/93577 (99%)	68/93577 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36386187	36434423	GA_x5HB7VCL77B_3:1-8721543\|+	1026919	1075155	+	48237		NCBI_chr7_b31:35848130-35989918	35941682	35989918	AC007327.1:1-141789\|+	93553	141789	+	48237		48073	48177/48241 (99%)	8/48241 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36434424	36594667	GA_x5HB7VCL77B_3:1-8721543\|+	1075156	1235399	+	160244		NCBI_chr7_b31:35989919-36150191	35989919	36150191	AC006960.1:1-160273\|+	1	160273	+	160273		159800	160109/160288 (99%)	59/160288 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36594668	36617499	GA_x5HB7VCL77B_3:1-8721543\|+	1235400	1258231	+	22832		NCBI_chr7_b31:36150192-36258469	36150192	36173039	AC083876.2:1-108278\|+	1	22848	+	22848		22760	22822/22849 (99%)	18/22849 (0%)
DELETION	36617470	36617499					0	DELETION	UNMATCHED	36173040	36173177					166	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	36617470	36670019	GA_x5HB7VCL77B_3:1-8721543\|+	1258202	1310751	+	52550		NCBI_chr7_b31:36150192-36258469	36173178	36225745	AC083876.2:1-108278\|+	22987	75554	+	52568		52083	52387/52591 (99%)	64/52591 (0%)
VARIATION	36670020	36670512					493	VARIATION	VARIATION	36225746	36226238					493	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	36670513	36671530	GA_x5HB7VCL77B_3:1-8721543\|+	1311245	1312262	+	1018		NCBI_chr7_b31:36150192-36258469	36226239	36227256	AC083876.2:1-108278\|+	76048	77065	+	1018		1018	1018/1018 (100%)	0/1018 (0%)
VARIATION	36671531	36672167					637	VARIATION	VARIATION	36227257	36227891					635	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	36672168	36702742	GA_x5HB7VCL77B_3:1-8721543\|+	1312900	1343474	+	30575		NCBI_chr7_b31:36150192-36258469	36227892	36258469	AC083876.2:1-108278\|+	77701	108278	+	30578		30483	30547/30581 (99%)	9/30581 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36702743	36780603	GA_x5HB7VCL77B_3:1-8721543\|+	1343475	1421335	+	77861		NCBI_chr7_b31:36258470-36416369	36258470	36336335	AC087069.3:1-157900\|+	1	77866	+	77866		77696	77803/77870 (99%)	13/77870 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36780548	36784555	GA_x5HB7VCL77B_3:1-8721543\|+	1421280	1425287	+	4008		NCBI_chr7_b31:36258470-36416369	36336302	36340309	AC087069.3:1-157900\|+	77833	81840	+	4008		3984	3996/4008 (99%)	0/4008 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36784547	36810052	GA_x5HB7VCL77B_3:1-8721543\|+	1425279	1450784	+	25506		NCBI_chr7_b31:36258470-36416369	36340279	36365792	AC087069.3:1-157900\|+	81810	107323	+	25514		25349	25449/25519 (99%)	18/25519 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36810008	36860682	GA_x5HB7VCL77B_3:1-8721543\|+	1450740	1501414	+	50675		NCBI_chr7_b31:36258470-36416369	36365723	36416369	AC087069.3:1-157900\|+	107254	157900	+	50647		50294	50533/50692 (99%)	62/50692 (0%)
CRA_TCAGchr7.v1:35359269-44080811	36860683	36888566	GA_x5HB7VCL77B_3:1-8721543\|+	1501415	1529298	+	27884		NCBI_chr7_b31:36416370-36570793	36416370	36444254	AC007349.1:1-154424\|+	1	27885	+	27885		27770	27830/27885 (99%)	1/27885 (0%)
CRA_TCAGchr7.v1:36888567-36890942	36888567	36890942					2376		NCBI_chr7_b31:36444255-36446697	36444255	36446697					2443
CRA_TCAGchr7.v1:35359269-44080811	36890943	36969689	GA_x5HB7VCL77B_3:1-8721543\|+	1531675	1610421	+	78747		NCBI_chr7_b31:36416370-36570793	36446698	36525453	AC007349.1:1-154424\|+	30329	109084	+	78756		78451	78630/78774 (99%)	45/78774 (0%)
DELETION	36969689	36969689					0	DELETION	UNMATCHED	36525454	36525541					87	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	36969689	36969845	GA_x5HB7VCL77B_3:1-8721543\|+	1610421	1610577	+	157		NCBI_chr7_b31:36416370-36570793	36525542	36525698	AC007349.1:1-154424\|+	109173	109329	+	157		157	157/157 (100%)	0/157 (0%)
DELETION	36969834	36969845					0	DELETION	UNMATCHED	36525699	36525706					18	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	36969834	37014932	GA_x5HB7VCL77B_3:1-8721543\|+	1610566	1655664	+	45099		NCBI_chr7_b31:36416370-36570793	36525707	36570793	AC007349.1:1-154424\|+	109338	154424	+	45087		44983	45049/45100 (99%)	14/45100 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37014933	37096541	GA_x5HB7VCL77B_3:1-8721543\|+	1655665	1737273	+	81609		NCBI_chr7_b31:36570794-36652401	36570794	36652401	AC078844.2:1-81608\|+	1	81608	+	81608		81448	81555/81627 (99%)	37/81627 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37096542	37244961	GA_x5HB7VCL77B_3:1-8721543\|+	1737274	1885693	+	148420		NCBI_chr7_b31:36652402-36800819	36652402	36800819	AC009196.14:1-148418\|+	1	148418	+	148418		148362	148399/148421 (99%)	4/148421 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37244962	37349936	GA_x5HB7VCL77B_3:1-8721543\|+	1885694	1990668	+	104975		NCBI_chr7_b31:36800820-36905797	36800820	36905797	AC007444.1:1-104978\|+	1	104978	+	104978		104442	104802/105007 (99%)	61/105007 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37349937	37426946	GA_x5HB7VCL77B_3:1-8721543\|+	1990669	2067678	+	77010		NCBI_chr7_b31:36905798-36982816	36905798	36982816	AC083861.2:1-77019\|+	1	77019	+	77019		76716	76904/77027 (99%)	25/77027 (0%)
VARIATION	37426947	37426956					10	VARIATION	VARIATION	36982817	36982831					15	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	37426957	37531945	GA_x5HB7VCL77B_3:1-8721543\|+	2067689	2172677	+	104989		NCBI_chr7_b31:36982817-37087799	36982832	37087799	AC078843.2:74434-179416\|-	74434	179401	+	104968		104554	104841/105003 (99%)	49/105003 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37531946	37567994	GA_x5HB7VCL77B_3:1-8721543\|+	2172678	2208726	+	36049		NCBI_chr7_b31:37087800-37248907	37087800	37123845	AC009530.5:28546-189653\|-	153608	189653	+	36046		35958	36016/36054 (99%)	13/36054 (0%)
UNMATCHED	37567995	37568304					310	UNMATCHED	DELETION	37123833	37123845					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	37568305	37693355	GA_x5HB7VCL77B_3:1-8721543\|+	2209037	2334087	+	125051		NCBI_chr7_b31:37087800-37248907	37123833	37248907	AC009530.5:28546-189653\|-	28546	153620	+	125075		124729	124940/125086 (99%)	46/125086 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37693356	37737524	GA_x5HB7VCL77B_3:1-8721543\|+	2334088	2378256	+	44169		NCBI_chr7_b31:37248908-37293079	37248908	37293079	AC083860.2:1-44172\|+	1	44172	+	44172		44149	44166/44173 (99%)	5/44173 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37737525	37823132	GA_x5HB7VCL77B_3:1-8721543\|+	2378257	2463864	+	85608		NCBI_chr7_b31:37293080-37504797	37293080	37378673	AC083865.2:1-211718\|+	1	85594	+	85594		85416	85542/85613 (99%)	24/85613 (0%)
UNMATCHED	37823133	37823140					8	UNMATCHED	DELETION	37378661	37378673					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	37823141	37927331	GA_x5HB7VCL77B_3:1-8721543\|+	2463873	2568063	+	104191		NCBI_chr7_b31:37293080-37504797	37378661	37482855	AC083865.2:1-211718\|+	85582	189776	+	104195		103703	104020/104217 (99%)	48/104217 (0%)
UNMATCHED	37927332	37927626					295	UNMATCHED	DELETION	37482843	37482855					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	37927627	37949581	GA_x5HB7VCL77B_3:1-8721543\|+	2568359	2590313	+	21955		NCBI_chr7_b31:37293080-37504797	37482843	37504797	AC083865.2:1-211718\|+	189764	211718	+	21955		21894	21930/21956 (99%)	2/21956 (0%)
CRA_TCAGchr7.v1:35359269-44080811	37949582	38089473	GA_x5HB7VCL77B_3:1-8721543\|+	2590314	2730205	+	139892		NCBI_chr7_b31:37504798-37677038	37504798	37644722	AC018634.3:2001-174241\|-	34317	174241	+	139925		139122	139619/139946 (99%)	75/139946 (0%)
DELETION	38089465	38089473					0	DELETION	UNMATCHED	37644723	37645028					313	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	38089465	38121517	GA_x5HB7VCL77B_3:1-8721543\|+	2730197	2762249	+	32053		NCBI_chr7_b31:37504798-37677038	37645029	37677038	AC018634.3:2001-174241\|-	2001	34010	+	32010		31833	31958/32053 (99%)	43/32053 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38121518	38132226	GA_x5HB7VCL77B_3:1-8721543\|+	2762250	2772958	+	10709		NCBI_chr7_b31:37677039-37687747	37677039	37687747	AC096544.1:1-10709\|+	1	10709	+	10709		10701	10705/10709 (99%)	0/10709 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38132227	38255004	GA_x5HB7VCL77B_3:1-8721543\|+	2772959	2895736	+	122778		NCBI_chr7_b31:37687748-37856805	37687748	37810526	AC073068.8:1-169058\|+	1	122779	+	122779		122270	122583/122811 (99%)	65/122811 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38254811	38301335	GA_x5HB7VCL77B_3:1-8721543\|+	2895543	2942067	+	46525		NCBI_chr7_b31:37687748-37856805	37810275	37856805	AC073068.8:1-169058\|+	122528	169058	+	46531		46436	46493/46535 (99%)	14/46535 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38301336	38309439	GA_x5HB7VCL77B_3:1-8721543\|+	2942068	2950171	+	8104		NCBI_chr7_b31:37856806-37864908	37856806	37864908	AC093460.4:1-8103\|+	1	8103	+	8103		8095	8102/8104 (99%)	1/8104 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38309440	38480702	GA_x5HB7VCL77B_3:1-8721543\|+	2950172	3121434	+	171263		NCBI_chr7_b31:37864909-38036524	37864909	38036151	AC006033.2:1-171616\|+	1	171243	+	171243		169594	170558/171322 (99%)	138/171322 (0%)
DELETION	38472079	38480702					0	DELETION	UNMATCHED	38036152	38041024					13495	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	38472079	38558708	GA_x5HB7VCL77B_3:1-8721543\|+	3112811	3199440	+	86630		NCBI_chr7_b31:38036525-38169461	38041025	38127681	AC007245.3:1-132937\|+	4501	91157	+	86657		85819	86298/86677 (99%)	67/86677 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38558601	38600529	GA_x5HB7VCL77B_3:1-8721543\|+	3199333	3241261	+	41929		NCBI_chr7_b31:38036525-38169461	38127534	38169461	AC007245.3:1-132937\|+	91010	132937	+	41928		41835	41896/41937 (99%)	17/41937 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38600530	38658180	GA_x5HB7VCL77B_3:1-8721543\|+	3241262	3298912	+	57651		NCBI_chr7_b31:38169462-38239268	38169462	38227095	AC012490.3:1-69807\|+	1	57634	+	57634		57434	57572/57660 (99%)	35/57660 (0%)
DELETION	38658179	38658180					0	DELETION	UNMATCHED	38227096	38227144					49	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	38658179	38670302	GA_x5HB7VCL77B_3:1-8721543\|+	3298911	3311034	+	12124		NCBI_chr7_b31:38169462-38239268	38227145	38239268	AC012490.3:1-69807\|+	57684	69807	+	12124		12100	12112/12124 (99%)	0/12124 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38670303	38697134	GA_x5HB7VCL77B_3:1-8721543\|+	3311035	3337866	+	26832		NCBI_chr7_b31:38239269-38266101	38239269	38266101	AC096581.1:1-26833\|+	1	26833	+	26833		26779	26814/26834 (99%)	3/26834 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38697135	38809827	GA_x5HB7VCL77B_3:1-8721543\|+	3337867	3450559	+	112693		NCBI_chr7_b31:38266102-38378764	38266102	38378764	AC011309.5:1-112663\|+	1	112663	+	112663		112338	112572/112701 (99%)	46/112701 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38809828	38915527	GA_x5HB7VCL77B_3:1-8721543\|+	3450560	3556259	+	105700		NCBI_chr7_b31:38378765-38484455	38378765	38484455	AC004850.3:1-105691\|+	1	105691	+	105691		105344	105571/105713 (99%)	35/105713 (0%)
CRA_TCAGchr7.v1:35359269-44080811	38915528	39039423	GA_x5HB7VCL77B_3:1-8721543\|+	3556260	3680155	+	123896		NCBI_chr7_b31:38484456-38608351	38484456	38608351	AC005247.2:1-123896\|+	1	123896	+	123896		123681	123815/123904 (99%)	16/123904 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39039424	39043722	GA_x5HB7VCL77B_3:1-8721543\|+	3680156	3684454	+	4299		NCBI_chr7_b31:38608352-38715288	38608352	38612651	AC011292.3:1-106937\|+	1	4300	+	4300		4289	4297/4300 (99%)	1/4300 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39043709	39146369	GA_x5HB7VCL77B_3:1-8721543\|+	3684441	3787101	+	102661		NCBI_chr7_b31:38608352-38715288	38612613	38715288	AC011292.3:1-106937\|+	4262	106937	+	102676		101726	102348/102770 (99%)	203/102770 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39146370	39147450	GA_x5HB7VCL77B_3:1-8721543\|+	3787102	3788182	+	1081		NCBI_chr7_b31:38715289-38858122	38715289	38716368	AC073345.11:1-142834\|+	1	1080	+	1080		1074	1080/1081 (99%)	1/1081 (0%)
VARIATION	39147451	39147539					89	VARIATION	VARIATION	38716369	38716474					106	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	39147540	39289193	GA_x5HB7VCL77B_3:1-8721543\|+	3788272	3929925	+	141654		NCBI_chr7_b31:38715289-38858122	38716475	38858122	AC073345.11:1-142834\|+	1187	142834	+	141648		141244	141526/141678 (99%)	54/141678 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39289194	39311464	GA_x5HB7VCL77B_3:1-8721543\|+	3929926	3952196	+	22271		NCBI_chr7_b31:38858123-39014309	38858123	38880404	AC092174.5:1-156187\|+	1	22282	+	22282		22182	22243/22284 (99%)	15/22284 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39311299	39411136	GA_x5HB7VCL77B_3:1-8721543\|+	3952031	4051868	+	99838		NCBI_chr7_b31:38858123-39014309	38880280	38980111	AC092174.5:1-156187\|+	22158	121989	+	99832		99434	99696/99863 (99%)	56/99863 (0%)
VARIATION	39411137	39411517					381	VARIATION	VARIATION	38980112	38980299					188	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	39411518	39445542	GA_x5HB7VCL77B_3:1-8721543\|+	4052250	4086274	+	34025		NCBI_chr7_b31:38858123-39014309	38980300	39014309	AC092174.5:1-156187\|+	122178	156187	+	34010		33856	33961/34026 (99%)	17/34026 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39445543	39457795	GA_x5HB7VCL77B_3:1-8721543\|+	4086275	4098527	+	12253		NCBI_chr7_b31:39014310-39175776	39014310	39026562	AC005483.1:201-161667\|-	149415	161667	+	12253		12237	12245/12253 (99%)	0/12253 (0%)
DELETION	39457779	39457795					0	DELETION	UNMATCHED	39026563	39026610					63	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	39457779	39606942	GA_x5HB7VCL77B_3:1-8721543\|+	4098511	4247674	+	149164		NCBI_chr7_b31:39014310-39175776	39026611	39175776	AC005483.1:201-161667\|-	201	149366	+	149166		148965	149077/149169 (99%)	8/149169 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39606943	39668845	GA_x5HB7VCL77B_3:1-8721543\|+	4247675	4309577	+	61903		NCBI_chr7_b31:39175777-39293340	39175777	39237678	AC011290.3:201-117764\|-	55863	117764	+	61902		61713	61830/61917 (99%)	29/61917 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39668647	39724482	GA_x5HB7VCL77B_3:1-8721543\|+	4309379	4365214	+	55836		NCBI_chr7_b31:39175777-39293340	39237514	39293340	AC011290.3:201-117764\|-	201	56027	+	55827		55553	55742/55856 (99%)	49/55856 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39724483	39734370	GA_x5HB7VCL77B_3:1-8721543\|+	4365215	4375102	+	9888		NCBI_chr7_b31:39293341-39428977	39293341	39303228	AC004837.1:201-135837\|-	125950	135837	+	9888		9880	9884/9888 (99%)	0/9888 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39734347	39860104	GA_x5HB7VCL77B_3:1-8721543\|+	4375079	4500836	+	125758		NCBI_chr7_b31:39293341-39428977	39303228	39428977	AC004837.1:201-135837\|-	201	125950	+	125750		125461	125663/125770 (99%)	32/125770 (0%)
CRA_TCAGchr7.v1:35359269-44080811	39860105	39907155	GA_x5HB7VCL77B_3:1-8721543\|+	4500837	4547887	+	47051		NCBI_chr7_b31:39428978-39538135	39428978	39476026	AC004987.2:2001-111158\|-	64110	111158	+	47049		46386	46801/47081 (99%)	62/47081 (0%)
VARIATION	39907156	39908408					1253	VARIATION	VARIATION	39476027	39477274					1248	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	39908409	39969273	GA_x5HB7VCL77B_3:1-8721543\|+	4549141	4610005	+	60865		NCBI_chr7_b31:39428978-39538135	39477275	39538135	AC004987.2:2001-111158\|-	2001	62861	+	60861		60352	60656/60875 (99%)	24/60875 (0%)
VARIATION	39969274	39969279					6	VARIATION	VARIATION	39538136	39538141					6	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	39969280	39971466	GA_x5HB7VCL77B_3:1-8721543\|+	4610012	4612198	+	2187		NCBI_chr7_b31:39538136-39552223	39538142	39540328	AC093081.3:1-14088\|+	7	2193	+	2187		2173	2180/2187 (99%)	0/2187 (0%)
VARIATION	39971467	39993110					21644	VARIATION	VARIATION	39540329	39562859					22531	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	39993111	40021633	GA_x5HB7VCL77B_3:1-8721543\|+	4633843	4662365	+	28523		NCBI_chr7_b31:39552224-39719875	39562860	39591382	AC072061.8:1-167652\|+	10637	39159	+	28523		28369	28475/28531 (99%)	16/28531 (0%)
CRA_TCAGchr7.v1:40021634-40137697	40021634	40137697					116064		NCBI_chr7_b31:39591383-39706874	39591383	39706874					115492
CRA_TCAGchr7.v1:35359269-44080811	40137698	40150697	GA_x5HB7VCL77B_3:1-8721543\|+	4778430	4791429	+	13000		NCBI_chr7_b31:39552224-39719875	39706875	39719875	AC072061.8:1-167652\|+	154652	167652	+	13001		12867	12959/13011 (99%)	21/13011 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40150698	40271401	GA_x5HB7VCL77B_3:1-8721543\|+	4791430	4912133	+	120704		NCBI_chr7_b31:39719876-39877060	39719876	39840606	AC006023.2:1-157185\|+	1	120731	+	120731		120534	120671/120733 (99%)	31/120733 (0%)
UNMATCHED	40271402	40272276					875	UNMATCHED	DELETION	39840474	39840606					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	40272277	40308861	GA_x5HB7VCL77B_3:1-8721543\|+	4913009	4949593	+	36585		NCBI_chr7_b31:39719876-39877060	39840474	39877060	AC006023.2:1-157185\|+	120599	157185	+	36587		36557	36580/36588 (99%)	4/36588 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40308862	40359673	GA_x5HB7VCL77B_3:1-8721543\|+	4949594	5000405	+	50812		NCBI_chr7_b31:39877061-39927872	39877061	39927872	AC025536.7:1-50812\|+	1	50812	+	50812		50767	50798/50814 (99%)	4/50814 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40359674	40366565	GA_x5HB7VCL77B_3:1-8721543\|+	5000406	5007297	+	6892		NCBI_chr7_b31:39927873-40105310	39927873	39934764	AC026866.8:1-177438\|+	1	6892	+	6892		6797	6859/6896 (99%)	8/6896 (0%)
VARIATION	40366566	40367005					440	VARIATION	VARIATION	39934765	39934916					152	VARIATION
CRA_TCAGchr7.v1:35359269-44080811	40367006	40491254	GA_x5HB7VCL77B_3:1-8721543\|+	5007738	5131986	+	124249		NCBI_chr7_b31:39927873-40105310	39934917	40059174	AC026866.8:1-177438\|+	7045	131302	+	124258		123542	124013/124304 (99%)	101/124304 (0%)
UNMATCHED	40491255	40491335					81	UNMATCHED	DELETION	40059081	40059174					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	40491336	40537568	GA_x5HB7VCL77B_3:1-8721543\|+	5132068	5178300	+	46233		NCBI_chr7_b31:39927873-40105310	40059081	40105310	AC026866.8:1-177438\|+	131209	177438	+	46230		45947	46133/46249 (99%)	35/46249 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40537569	40552739	GA_x5HB7VCL77B_3:1-8721543\|+	5178301	5193471	+	15171		NCBI_chr7_b31:40105311-40120500	40105311	40120500	AC092030.3:1-15190\|+	1	15190	+	15190		15128	15164/15190 (99%)	19/15190 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40552740	40738685	GA_x5HB7VCL77B_3:1-8721543\|+	5193472	5379417	+	185946		NCBI_chr7_b31:40120501-40306441	40120501	40306441	AC004988.2:1-185941\|+	1	185941	+	185941		185833	185909/185955 (99%)	23/185955 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40738686	40887361	GA_x5HB7VCL77B_3:1-8721543\|+	5379418	5528093	+	148676		NCBI_chr7_b31:40306442-40455156	40306442	40455156	AC005030.1:1-148715\|+	1	148715	+	148715		148562	148653/148719 (99%)	47/148719 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40887362	40894820	GA_x5HB7VCL77B_3:1-8721543\|+	5528094	5535552	+	7459		NCBI_chr7_b31:40455157-40462619	40455157	40462619	AC079149.4:1-7463\|+	1	7463	+	7463		7431	7454/7467 (99%)	12/7467 (0%)
CRA_TCAGchr7.v1:35359269-44080811	40894821	41021795	GA_x5HB7VCL77B_3:1-8721543\|+	5535553	5662527	+	126975		NCBI_chr7_b31:40462620-40589597	40462620	40589597	AC005160.1:1-126978\|+	1	126978	+	126978		126775	126910/126995 (99%)	37/126995 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41021796	41206502	GA_x5HB7VCL77B_3:1-8721543\|+	5662528	5847234	+	184707		NCBI_chr7_b31:40589598-40774346	40589598	40774346	AC005029.1:1-184749\|+	1	184749	+	184749		184085	184512/184779 (99%)	102/184779 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41206503	41309869	GA_x5HB7VCL77B_3:1-8721543\|+	5847235	5950601	+	103367		NCBI_chr7_b31:40774347-40877711	40774347	40877711	AC005022.1:1-103365\|+	1	103365	+	103365		103304	103346/103368 (99%)	4/103368 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41309870	41320667	GA_x5HB7VCL77B_3:1-8721543\|+	5950602	5961399	+	10798		NCBI_chr7_b31:40877712-40888509	40877712	40888509	AC006573.1:1-10798\|+	1	10798	+	10798		10788	10793/10798 (99%)	0/10798 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41320668	41457139	GA_x5HB7VCL77B_3:1-8721543\|+	5961400	6097871	+	136472		NCBI_chr7_b31:40888510-41024964	40888510	41024964	AC004843.1:1-136455\|+	1	136455	+	136455		136130	136359/136488 (99%)	49/136488 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41457140	41470712	GA_x5HB7VCL77B_3:1-8721543\|+	6097872	6111444	+	13573		NCBI_chr7_b31:41024965-41038537	41024965	41038537	AC013455.5:1-13573\|+	1	13573	+	13573		13571	13572/13573 (99%)	0/13573 (0%)
CRA_TCAGchr7.v1:41470713-41576639	41470713	41576639					105927		NCBI_chr7_b31:41038538-41144421	41038538	41144421					105884
CRA_TCAGchr7.v1:35359269-44080811	41576640	41596789	GA_x5HB7VCL77B_3:1-8721543\|+	6217372	6237521	+	20150		NCBI_chr7_b31:41038538-41164590	41144422	41164590	AC004934.1:1-126053\|+	105885	126053	+	20169		20036	20121/20171 (99%)	23/20171 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41596790	41741412	GA_x5HB7VCL77B_3:1-8721543\|+	6237522	6382144	+	144623		NCBI_chr7_b31:41164591-41319249	41164591	41309170	AC012596.4:1-154659\|+	1	144580	+	144580		143984	144381/144653 (99%)	103/144653 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41740022	41751487	GA_x5HB7VCL77B_3:1-8721543\|+	6380754	6392219	+	11466		NCBI_chr7_b31:41164591-41319249	41307788	41319249	AC012596.4:1-154659\|+	143198	154659	+	11462		11383	11437/11471 (99%)	14/11471 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41751488	41908351	GA_x5HB7VCL77B_3:1-8721543\|+	6392220	6549083	+	156864		NCBI_chr7_b31:41319250-41476122	41319250	41476122	AC005027.3:1-156873\|+	1	156873	+	156873		156167	156599/156896 (99%)	55/156896 (0%)
CRA_TCAGchr7.v1:35359269-44080811	41908352	42097413	GA_x5HB7VCL77B_3:1-8721543\|+	6549084	6738145	+	189062		NCBI_chr7_b31:41476123-41665201	41476123	41665201	AC005028.2:1-189079\|+	1	189079	+	189079		188841	188987/189083 (99%)	25/189083 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42097414	42220721	GA_x5HB7VCL77B_3:1-8721543\|+	6738146	6861453	+	123308		NCBI_chr7_b31:41665202-41788527	41665202	41788527	AC005026.2:1-123326\|+	1	123326	+	123326		122984	123202/123335 (99%)	36/123335 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42220722	42235522	GA_x5HB7VCL77B_3:1-8721543\|+	6861454	6876254	+	14801		NCBI_chr7_b31:41788528-41803326	41788528	41803326	AC073852.4:1-14799\|+	1	14799	+	14799		14753	14782/14801 (99%)	2/14801 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42235523	42250265	GA_x5HB7VCL77B_3:1-8721543\|+	6876255	6890997	+	14743		NCBI_chr7_b31:41803327-42069470	41803327	41818061	AC005158.3:1-266144\|+	1	14735	+	14735		14658	14708/14743 (99%)	8/14743 (0%)
UNMATCHED	42250266	42250266					1	UNMATCHED	DELETION	41818047	41818061					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	42250267	42501728	GA_x5HB7VCL77B_3:1-8721543\|+	6890999	7142460	+	251462		NCBI_chr7_b31:41803327-42069470	41818047	42069470	AC005158.3:1-266144\|+	14721	266144	+	251424		250753	251198/251488 (99%)	90/251488 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42501729	42628157	GA_x5HB7VCL77B_3:1-8721543\|+	7142461	7268889	+	126429		NCBI_chr7_b31:42069471-42197983	42069471	42195916	AC011296.3:1-128513\|+	1	126446	+	126446		126155	126338/126456 (99%)	37/126456 (0%)
DELETION	42628141	42628157					0	DELETION	UNMATCHED	42195917	42196221					320	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	42628141	42629902	GA_x5HB7VCL77B_3:1-8721543\|+	7268873	7270634	+	1762		NCBI_chr7_b31:42069471-42197983	42196222	42197983	AC011296.3:1-128513\|+	126752	128513	+	1762		1750	1756/1762 (99%)	0/1762 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42629903	42682782	GA_x5HB7VCL77B_3:1-8721543\|+	7270635	7323514	+	52880		NCBI_chr7_b31:42197984-42327311	42197984	42250861	AC099798.4:1-129328\|+	1	52878	+	52878		52772	52831/52880 (99%)	2/52880 (0%)
DELETION	42682746	42682782					0	DELETION	UNMATCHED	42250862	42251166					340	UNMATCHED
CRA_TCAGchr7.v1:35359269-44080811	42682746	42725435	GA_x5HB7VCL77B_3:1-8721543\|+	7323478	7366167	+	42690		NCBI_chr7_b31:42197984-42327311	42251167	42293862	AC099798.4:1-129328\|+	53184	95879	+	42696		42592	42652/42697 (99%)	8/42697 (0%)
UNMATCHED	42725436	42725742					307	UNMATCHED	DELETION	42293846	42293862					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	42725743	42759204	GA_x5HB7VCL77B_3:1-8721543\|+	7366475	7399936	+	33462		NCBI_chr7_b31:42197984-42327311	42293846	42327311	AC099798.4:1-129328\|+	95863	129328	+	33466		33392	33434/33466 (99%)	4/33466 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42759205	42828986	GA_x5HB7VCL77B_3:1-8721543\|+	7399937	7469718	+	69782		NCBI_chr7_b31:42327312-42486809	42327312	42397097	AC027269.5:201-159698\|-	89913	159698	+	69786		69560	69720/69800 (99%)	32/69800 (0%)
UNMATCHED	42828987	42829012					26	UNMATCHED	DELETION	42397096	42397097					0	DELETION
CRA_TCAGchr7.v1:35359269-44080811	42829013	42918745	GA_x5HB7VCL77B_3:1-8721543\|+	7469745	7559477	+	89733		NCBI_chr7_b31:42327312-42486809	42397096	42486809	AC027269.5:201-159698\|-	201	89914	+	89714		89440	89625/89740 (99%)	33/89740 (0%)
CRA_TCAGchr7.v1:35359269-44080811	42918746	43085143	GA_x5HB7VCL77B_3:1-8721543\|+	7559478	7725875	+	166398		NCBI_chr7_b31:42486810-42653289	42486810	42653289	AC010132.5:201-166680\|-	201	166680	+	166480		165253	166058/166533 (99%)	188/166533 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43085144	43261706	GA_x5HB7VCL77B_3:1-8721543\|+	7725876	7902438	+	176563		NCBI_chr7_b31:42653290-42829839	42653290	42829839	AC005537.2:201-176750\|-	201	176750	+	176550		175889	176339/176589 (99%)	65/176589 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43261707	43340038	GA_x5HB7VCL77B_3:1-8721543\|+	7902439	7980770	+	78332		NCBI_chr7_b31:42829840-42908159	42829840	42908159	AC004455.2:201-78520\|-	201	78520	+	78320		78137	78263/78334 (99%)	16/78334 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43340039	43466408	GA_x5HB7VCL77B_3:1-8721543\|+	7980771	8107140	+	126370		NCBI_chr7_b31:42908160-43034538	42908160	43034538	AC004692.2:201-126579\|-	201	126579	+	126379		126075	126261/126387 (99%)	25/126387 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43466409	43564657	GA_x5HB7VCL77B_3:1-8721543\|+	8107141	8205389	+	98249		NCBI_chr7_b31:43034539-43132771	43034539	43132771	AC006365.3:201-98433\|-	201	98433	+	98233		97966	98154/98262 (99%)	42/98262 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43564658	43704430	GA_x5HB7VCL77B_3:1-8721543\|+	8205390	8345162	+	139773		NCBI_chr7_b31:43132772-43272548	43132772	43272548	AC011738.4:2001-141777\|-	2001	141777	+	139777		139484	139673/139787 (99%)	24/139787 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43704431	43738848	GA_x5HB7VCL77B_3:1-8721543\|+	8345163	8379580	+	34418		NCBI_chr7_b31:43272549-43306963	43272549	43306963	AC093645.4:1-34415\|+	1	34415	+	34415		34186	34340/34429 (99%)	25/34429 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43738849	43915022	GA_x5HB7VCL77B_3:1-8721543\|+	8379581	8555754	+	176174		NCBI_chr7_b31:43306964-43483176	43306964	43483176	AC005189.2:201-176413\|-	201	176413	+	176213		175692	176017/176227 (99%)	67/176227 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43915023	43923542	GA_x5HB7VCL77B_3:1-8721543\|+	8555755	8564274	+	8520		NCBI_chr7_b31:43483177-43491693	43483177	43491693	AC004939.1:201-8717\|-	201	8717	+	8517		8466	8498/8520 (99%)	3/8520 (0%)
CRA_TCAGchr7.v1:35359269-44080811	43923543	44080811	GA_x5HB7VCL77B_3:1-8721543\|+	8564275	8721543	+	157269		NCBI_chr7_b31:43491694-43651000	43491694	43648945	AC004985.2:201-159507\|-	2256	159507	+	157252		156917	157158/157284 (99%)	47/157284 (0%)
CRA_TCAGchr7.v1:44080812-44083066	44080812	44082866	AC004985.2:1-2255\|-	201	2255	+	2055		NCBI_chr7_b31:43491694-43651000	43648946	43651000	AC004985.2:201-159507\|-	201	2255	+	2055		2055	2055/2055 (100%)	0/2055 (0%)
CRA_TCAGchr7.v1:44080812-44083066	44082867	44083066	AC004985.2:1-2255\|-	1	200	+	200		NCBI_chr7_b31:43651001-43700993	43651001	43651200	AC004951.5:2001-51993\|-	51794	51993	+	200		200	200/200 (100%)	0/200 (0%)
CRA_TCAGchr7.v1:44083067-44134859	44083067	44132859	AC004951.5:1-51793\|-	2001	51793	+	49793		NCBI_chr7_b31:43651001-43700993	43651201	43700993	AC004951.5:2001-51993\|-	2001	51793	+	49793		49793	49793/49793 (100%)	0/49793 (0%)
CRA_TCAGchr7.v1:44132860-44134859	44132860	44134859					2000		NCBI_chr7_b31:43700994-43702993	43700994	43702993					2000
CRA_TCAGchr7.v1:44134860-44159323	44134860	44159323	AC017116.7:2001-26464\|+	2001	26464	+	24464		NCBI_chr7_b31:43700994-43785196	43702994	43727457	AC017116.7:1-84203\|+	2001	26464	+	24464		24464	24464/24464 (100%)	0/24464 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44159324	44191434	GA_x5HB7VCL761_3:1-1684559\|-	1652449	1684559	+	32111		NCBI_chr7_b31:43700994-43785196	43727458	43759573	AC017116.7:1-84203\|+	26465	58580	+	32116		31974	32076/32123 (99%)	19/32123 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44191406	44217060	GA_x5HB7VCL761_3:1-1684559\|-	1626823	1652477	+	25655		NCBI_chr7_b31:43700994-43785196	43759544	43785196	AC017116.7:1-84203\|+	58551	84203	+	25653		25548	25612/25656 (99%)	4/25656 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44217061	44368288	GA_x5HB7VCL761_3:1-1684559\|-	1475595	1626822	+	151228		NCBI_chr7_b31:43785197-43936397	43785197	43936397	AC006454.3:2001-153201\|-	2001	153201	+	151201		150665	151037/151239 (99%)	49/151239 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44368289	44430892	GA_x5HB7VCL761_3:1-1684559\|-	1412991	1475594	+	62604		NCBI_chr7_b31:43936398-43998998	43936398	43998998	AC093086.4:1-62601\|+	1	62601	+	62601		62479	62563/62607 (99%)	9/62607 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44430893	44472566	GA_x5HB7VCL761_3:1-1684559\|-	1371317	1412990	+	41674		NCBI_chr7_b31:43998999-44040672	43998999	44040672	AC106040.3:1-41674\|+	1	41674	+	41674		41586	41636/41676 (99%)	4/41676 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44472567	44618870	GA_x5HB7VCL761_3:1-1684559\|-	1225013	1371316	+	146304		NCBI_chr7_b31:44040673-44186972	44040673	44186972	AC004453.1:201-146500\|-	201	146500	+	146300		146266	146296/146306 (99%)	8/146306 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44618871	44706667	GA_x5HB7VCL761_3:1-1684559\|-	1137216	1225012	+	87797		NCBI_chr7_b31:44186973-44274800	44186973	44274776	AC004938.2:201-88028\|-	225	88028	+	87804		87537	87706/87820 (99%)	39/87820 (0%)
VARIATION	44706668	44706693					26	VARIATION	VARIATION	44274777	44274800					24	VARIATION
CRA_TCAGchr7.v1:44159324-45843882	44706694	44730804	GA_x5HB7VCL761_3:1-1684559\|-	1113079	1137189	+	24111		NCBI_chr7_b31:44274801-44298910	44274801	44298910	AC011894.3:201-24310\|-	201	24310	+	24110		24081	24104/24112 (99%)	3/24112 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44730805	44876062	GA_x5HB7VCL761_3:1-1684559\|-	967821	1113078	+	145258		NCBI_chr7_b31:44298911-44444152	44298911	44444152	AC004859.3:201-145442\|-	201	145442	+	145242		144992	145166/145270 (99%)	40/145270 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44876063	44890880	GA_x5HB7VCL761_3:1-1684559\|-	953003	967820	+	14818		NCBI_chr7_b31:44444153-44507775	44444153	44458970	AC013436.5:201-63823\|-	49006	63823	+	14818		14770	14805/14820 (99%)	4/14820 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44890824	44939656	GA_x5HB7VCL761_3:1-1684559\|-	904227	953059	+	48833		NCBI_chr7_b31:44444153-44507775	44458944	44507775	AC013436.5:201-63823\|-	201	49032	+	48832		48590	48766/48847 (99%)	29/48847 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44939657	44989807	GA_x5HB7VCL761_3:1-1684559\|-	854076	904226	+	50151		NCBI_chr7_b31:44507776-44606272	44507776	44557927	AC004854.3:201-98697\|-	48546	98697	+	50152		49547	49932/50177 (99%)	51/50177 (0%)
CRA_TCAGchr7.v1:44159324-45843882	44988701	45038082	GA_x5HB7VCL761_3:1-1684559\|-	805801	855182	+	49382		NCBI_chr7_b31:44507776-44606272	44556902	44606272	AC004854.3:201-98697\|-	201	49571	+	49371		49243	49334/49385 (99%)	17/49385 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45038083	45160213	GA_x5HB7VCL761_3:1-1684559\|-	683670	805800	+	122131		NCBI_chr7_b31:44606273-44728352	44606273	44728352	AC004847.3:201-122280\|-	201	122280	+	122080		121540	121931/122162 (99%)	113/122162 (0%)
CRA_TCAGchr7.v1:45160214-45200782	45160214	45200782					40569		NCBI_chr7_b31:44728353-44769237	44728353	44769237					40885
CRA_TCAGchr7.v1:44159324-45843882	45200783	45277617	GA_x5HB7VCL761_3:1-1684559\|-	566266	643100	+	76835		NCBI_chr7_b31:44728353-44846079	44769238	44846079	AC013416.4:201-117927\|-	201	77042	+	76842		76669	76771/76843 (99%)	9/76843 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45277618	45419320	GA_x5HB7VCL761_3:1-1684559\|-	424563	566265	+	141703		NCBI_chr7_b31:44846080-44987774	44846080	44987774	AC004844.1:201-141895\|-	201	141895	+	141695		141097	141480/141733 (99%)	68/141733 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45419321	45490030	GA_x5HB7VCL761_3:1-1684559\|-	353853	424562	+	70710		NCBI_chr7_b31:44987775-45079819	44987775	45058464	AC073968.8:201-92245\|-	21556	92245	+	70690		70538	70649/70715 (99%)	30/70715 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45488480	45511413	GA_x5HB7VCL761_3:1-1684559\|-	332470	355403	+	22934		NCBI_chr7_b31:44987775-45079819	45056914	45079819	AC073968.8:201-92245\|-	201	23106	+	22906		22852	22898/22934 (99%)	28/22934 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45511414	45678287	GA_x5HB7VCL761_3:1-1684559\|-	165596	332469	+	166874		NCBI_chr7_b31:45079820-45246691	45079820	45246691	AC073325.9:2001-168872\|-	2001	168872	+	166872		166679	166804/166879 (99%)	12/166879 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45678288	45753336	GA_x5HB7VCL761_3:1-1684559\|-	90547	165595	+	75049		NCBI_chr7_b31:45246692-45334943	45246692	45321744	AC069008.6:1-88252\|+	1	75053	+	75053		74634	74874/75059 (99%)	16/75059 (0%)
UNMATCHED	45753337	45753404					68	UNMATCHED	DELETION	45321677	45321744					0	DELETION
CRA_TCAGchr7.v1:44159324-45843882	45753405	45766670	GA_x5HB7VCL761_3:1-1684559\|-	77213	90478	+	13266		NCBI_chr7_b31:45246692-45334943	45321677	45334943	AC069008.6:1-88252\|+	74986	88252	+	13267		13231	13257/13268 (99%)	3/13268 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45766671	45791509	GA_x5HB7VCL761_3:1-1684559\|-	52374	77212	+	24839		NCBI_chr7_b31:45334944-45436718	45334944	45359783	AC091439.5:1-101775\|+	1	24840	+	24840		24765	24805/24840 (99%)	1/24840 (0%)
CRA_TCAGchr7.v1:44159324-45843882	45791488	45843882	GA_x5HB7VCL761_3:1-1684559\|-	1	52395	+	52395		NCBI_chr7_b31:45334944-45436718	45359784	45412175	AC091439.5:1-101775\|+	24841	77232	+	52392		52198	52322/52401 (99%)	15/52401 (0%)
CRA_TCAGchr7.v1:45843883-45870425	45843883	45868425	AC091439.5:77233-103775\|+	77233	101775	+	24543		NCBI_chr7_b31:45334944-45436718	45412176	45436718	AC091439.5:1-101775\|+	77233	101775	+	24543		24543	24543/24543 (100%)	0/24543 (0%)
CRA_TCAGchr7.v1:45843883-45870425	45868426	45870425	AC091439.5:77233-103775\|+	101776	103775	+	2000		NCBI_chr7_b31:45436719-45566840	45436719	45438718	AC096582.1:1-130122\|+	1	2000	+	2000		1998	1999/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:45870426-45975559	45870426	45975559	AC096582.1:2001-107134\|+	2001	107134	+	105134		NCBI_chr7_b31:45436719-45566840	45438719	45543852	AC096582.1:1-130122\|+	2001	107134	+	105134		105134	105134/105134 (100%)	0/105134 (0%)
CRA_TCAGchr7.v1:45975560-48208174	45975560	45998548	GA_x5HB7VCL7FH_6:1-2232615\|+	1	22989	+	22989		NCBI_chr7_b31:45436719-45566840	45543853	45566840	AC096582.1:1-130122\|+	107135	130122	+	22988		22951	22978/22990 (99%)	3/22990 (0%)
CRA_TCAGchr7.v1:45975560-48208174	45998549	46067912	GA_x5HB7VCL7FH_6:1-2232615\|+	22990	92353	+	69364		NCBI_chr7_b31:45566841-45636527	45566841	45636218	AC091524.4:1-69687\|+	1	69378	+	69378		69031	69263/69400 (99%)	58/69400 (0%)
VARIATION	46067913	46068162					250	VARIATION	VARIATION	45636219	45636527					309	VARIATION
CRA_TCAGchr7.v1:45975560-48208174	46068163	46180027	GA_x5HB7VCL7FH_6:1-2232615\|+	92604	204468	+	111865		NCBI_chr7_b31:45636528-45801857	45636528	45748388	AC073115.5:1-165330\|+	1	111861	+	111861		111462	111720/111888 (99%)	50/111888 (0%)
UNMATCHED	46180028	46180312					285	UNMATCHED	DELETION	45748362	45748388					0	DELETION
CRA_TCAGchr7.v1:45975560-48208174	46180313	46233780	GA_x5HB7VCL7FH_6:1-2232615\|+	204754	258221	+	53468		NCBI_chr7_b31:45636528-45801857	45748362	45801857	AC073115.5:1-165330\|+	111835	165330	+	53496		53311	53427/53503 (99%)	42/53503 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46233781	46245256	GA_x5HB7VCL7FH_6:1-2232615\|+	258222	269697	+	11476		NCBI_chr7_b31:45801858-45813321	45801858	45813321	AC079757.8:1-11464\|+	1	11464	+	11464		11414	11450/11476 (99%)	12/11476 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46245257	46451055	GA_x5HB7VCL7FH_6:1-2232615\|+	269698	475496	+	205799		NCBI_chr7_b31:45813322-46019127	45813322	46019127	AC023669.8:1-205806\|+	1	205806	+	205806		205391	205639/205822 (99%)	39/205822 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46451056	46520249	GA_x5HB7VCL7FH_6:1-2232615\|+	475497	544690	+	69194		NCBI_chr7_b31:46019128-46088329	46019128	46088329	AC092657.2:1-69202\|+	1	69202	+	69202		69049	69145/69206 (99%)	16/69206 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46520250	46679095	GA_x5HB7VCL7FH_6:1-2232615\|+	544691	703536	+	158846		NCBI_chr7_b31:46088330-46247173	46088330	46247173	AC004869.1:201-159044\|-	201	159044	+	158844		158540	158737/158864 (99%)	38/158864 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46679096	46845600	GA_x5HB7VCL7FH_6:1-2232615\|+	703537	870041	+	166505		NCBI_chr7_b31:46247174-46413688	46247174	46413688	AC011294.3:201-166715\|-	201	166715	+	166515		166009	166325/166531 (99%)	42/166531 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46845601	46955471	GA_x5HB7VCL7FH_6:1-2232615\|+	870042	979912	+	109871		NCBI_chr7_b31:46413689-46523561	46413689	46523561	AC073275.8:2001-111873\|-	2001	111873	+	109873		109423	109715/109897 (99%)	50/109897 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46955472	46982753	GA_x5HB7VCL7FH_6:1-2232615\|+	979913	1007194	+	27282		NCBI_chr7_b31:46523562-46557042	46523562	46550871	AC091999.4:2001-35481\|-	8172	35481	+	27310		27028	27199/27315 (99%)	38/27315 (0%)
UNMATCHED	46982754	46982974					221	UNMATCHED	DELETION	46550855	46550871					0	DELETION
CRA_TCAGchr7.v1:45975560-48208174	46982975	46989162	GA_x5HB7VCL7FH_6:1-2232615\|+	1007416	1013603	+	6188		NCBI_chr7_b31:46523562-46557042	46550855	46557042	AC091999.4:2001-35481\|-	2001	8188	+	6188		6178	6183/6188 (99%)	0/6188 (0%)
CRA_TCAGchr7.v1:45975560-48208174	46989163	47069229	GA_x5HB7VCL7FH_6:1-2232615\|+	1013604	1093670	+	80067		NCBI_chr7_b31:46557043-46637130	46557043	46637130	AC004901.1:201-80288\|-	201	80288	+	80088		79711	79944/80097 (99%)	39/80097 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47069230	47213582	GA_x5HB7VCL7FH_6:1-2232615\|+	1093671	1238023	+	144353		NCBI_chr7_b31:46637131-46781476	46637131	46781476	AC004870.2:201-144546\|-	201	144546	+	144346		144065	144232/144359 (99%)	19/144359 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47213583	47361292	GA_x5HB7VCL7FH_6:1-2232615\|+	1238024	1385733	+	147710		NCBI_chr7_b31:46781477-46929184	46781477	46929184	AC012590.5:2001-149708\|-	2001	149708	+	147708		147250	147524/147723 (99%)	28/147723 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47361293	47382289	GA_x5HB7VCL7FH_6:1-2232615\|+	1385734	1406730	+	20997		NCBI_chr7_b31:46929185-46950180	46929185	46950180	AC087175.6:2001-22996\|-	2001	22996	+	20996		20925	20969/20998 (99%)	3/20998 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47382290	47480834	GA_x5HB7VCL7FH_6:1-2232615\|+	1406731	1505275	+	98545		NCBI_chr7_b31:46950181-47133754	46950181	47048715	AC073341.10:1-183574\|+	1	98535	+	98535		98242	98433/98559 (99%)	38/98559 (0%)
CRA_TCAGchr7.v1:47480835-47507349	47480835	47507349					26515		NCBI_chr7_b31:47048716-47074796	47048716	47074796					26081
CRA_TCAGchr7.v1:45975560-48208174	47507350	47566283	GA_x5HB7VCL7FH_6:1-2232615\|+	1531791	1590724	+	58934		NCBI_chr7_b31:46950181-47133754	47074797	47133754	AC073341.10:1-183574\|+	124617	183574	+	58958		58629	58834/58969 (99%)	46/58969 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47566284	47721404	GA_x5HB7VCL7FH_6:1-2232615\|+	1590725	1745845	+	155121		NCBI_chr7_b31:47133755-47288855	47133755	47288855	AC092000.3:1-155101\|+	1	155101	+	155101		154308	154825/155152 (99%)	82/155152 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47721405	47807719	GA_x5HB7VCL7FH_6:1-2232615\|+	1745846	1832160	+	86315		NCBI_chr7_b31:47288856-47375136	47288856	47375136	AC095067.4:1-86281\|+	1	86281	+	86281		85896	86159/86322 (99%)	48/86322 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47807720	47834477	GA_x5HB7VCL7FH_6:1-2232615\|+	1832161	1858918	+	26758		NCBI_chr7_b31:47375137-47401887	47375137	47401887	AC104696.4:1-26751\|+	1	26751	+	26751		26607	26702/26767 (99%)	25/26767 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47834478	47929458	GA_x5HB7VCL7FH_6:1-2232615\|+	1858919	1953899	+	94981		NCBI_chr7_b31:47401888-47496905	47401888	47496905	AC019066.6:1-95018\|+	1	95018	+	95018		94532	94836/95030 (99%)	61/95030 (0%)
CRA_TCAGchr7.v1:45975560-48208174	47929459	47973935	GA_x5HB7VCL7FH_6:1-2232615\|+	1953900	1998376	+	44477		NCBI_chr7_b31:47496906-47672643	47496906	47541386	AC069282.6:1-175738\|+	1	44481	+	44481		44427	44464/44481 (99%)	4/44481 (0%)
DELETION	47973915	47973935					0	DELETION	UNMATCHED	47541387	47541692					325	UNMATCHED
CRA_TCAGchr7.v1:45975560-48208174	47973915	48039893	GA_x5HB7VCL7FH_6:1-2232615\|+	1998356	2064334	+	65979		NCBI_chr7_b31:47496906-47672643	47541693	47607669	AC069282.6:1-175738\|+	44788	110764	+	65977		65797	65918/65999 (99%)	42/65999 (0%)
VARIATION	48039894	48039919					26	VARIATION	VARIATION	47607670	47607692					23	VARIATION
CRA_TCAGchr7.v1:45975560-48208174	48039920	48104900	GA_x5HB7VCL7FH_6:1-2232615\|+	2064361	2129341	+	64981		NCBI_chr7_b31:47496906-47672643	47607693	47672643	AC069282.6:1-175738\|+	110788	175738	+	64951		64694	64869/64984 (99%)	36/64984 (0%)
CRA_TCAGchr7.v1:45975560-48208174	48104901	48157864	GA_x5HB7VCL7FH_6:1-2232615\|+	2129342	2182305	+	52964		NCBI_chr7_b31:47672644-47776541	47672644	47725585	AC069279.6:1-103898\|+	1	52942	+	52942		52752	52882/52967 (99%)	28/52967 (0%)
CRA_TCAGchr7.v1:45975560-48208174	48157792	48208174	GA_x5HB7VCL7FH_6:1-2232615\|+	2182233	2232615	+	50383		NCBI_chr7_b31:47672644-47776541	47725585	47776000	AC069279.6:1-103898\|+	52942	103357	+	50416		50020	50236/50422 (99%)	45/50422 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48208175	48208715	GA_x54KREB6MY7_6:1-3465122\|-	3464582	3465122	+	541		NCBI_chr7_b31:47672644-47776541	47776001	47776541	AC069279.6:1-103898\|+	103358	103898	+	541		541	541/541 (100%)	0/541 (0%)
UNMATCHED	48208716	48316968					108253	UNMATCHED	GAP	47776542	47786541					10000	GAP
CRA_TCAGchr7.v1:48208175-51673296	48316969	48461135	GA_x54KREB6MY7_6:1-3465122\|-	3212162	3356328	+	144167		NCBI_chr7_b31:47786542-47975682	47786542	47930706	AC073424.8:1-189141\|+	1	144165	+	144165		143966	144099/144182 (99%)	32/144182 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48460985	48506127	GA_x54KREB6MY7_6:1-3465122\|-	3167170	3212312	+	45143		NCBI_chr7_b31:47786542-47975682	47930542	47975682	AC073424.8:1-189141\|+	144001	189141	+	45141		45089	45121/45143 (99%)	2/45143 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48506128	48574551	GA_x54KREB6MY7_6:1-3465122\|-	3098746	3167169	+	68424		NCBI_chr7_b31:47975683-48044098	47975683	48044098	AC095039.3:1-68416\|+	1	68416	+	68416		68265	68368/68431 (99%)	22/68431 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48574552	48600770	GA_x54KREB6MY7_6:1-3465122\|-	3072527	3098745	+	26219		NCBI_chr7_b31:48044099-48227774	48044099	48070317	AC073927.9:1-183676\|+	1	26219	+	26219		26197	26208/26219 (99%)	0/26219 (0%)
UNMATCHED	48600771	48601124					354	UNMATCHED	DELETION	48069834	48070317					0	DELETION
CRA_TCAGchr7.v1:48208175-51673296	48601125	48637054	GA_x54KREB6MY7_6:1-3465122\|-	3036243	3072172	+	35930		NCBI_chr7_b31:48044099-48227774	48069834	48105761	AC073927.9:1-183676\|+	25736	61663	+	35928		35857	35910/35933 (99%)	8/35933 (0%)
VARIATION	48637055	48670873					33819	VARIATION	VARIATION	48105762	48105989					228	VARIATION
CRA_TCAGchr7.v1:48208175-51673296	48670874	48792653	GA_x54KREB6MY7_6:1-3465122\|-	2880644	3002423	+	121780		NCBI_chr7_b31:48044099-48227774	48105990	48227774	AC073927.9:1-183676\|+	61892	183676	+	121785		121596	121714/121797 (99%)	29/121797 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48792654	48872413	GA_x54KREB6MY7_6:1-3465122\|-	2800884	2880643	+	79760		NCBI_chr7_b31:48227775-48319317	48227775	48307525	AC091770.5:2001-93543\|-	13793	93543	+	79751		79575	79698/79766 (99%)	21/79766 (0%)
UNMATCHED	48872414	48872523					110	UNMATCHED	DELETION	48307427	48307525					0	DELETION
CRA_TCAGchr7.v1:48208175-51673296	48872524	48884415	GA_x54KREB6MY7_6:1-3465122\|-	2788882	2800773	+	11892		NCBI_chr7_b31:48227775-48319317	48307427	48319317	AC091770.5:2001-93543\|-	2001	13891	+	11891		11885	11891/11892 (99%)	1/11892 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48884416	48964727	GA_x54KREB6MY7_6:1-3465122\|-	2708570	2788881	+	80312		NCBI_chr7_b31:48319318-48399632	48319318	48399632	AC011992.3:201-80515\|-	201	80515	+	80315		80181	80266/80321 (99%)	15/80321 (0%)
CRA_TCAGchr7.v1:48208175-51673296	48964728	49055662	GA_x54KREB6MY7_6:1-3465122\|-	2617635	2708569	+	90935		NCBI_chr7_b31:48399633-48490557	48399633	48490557	AC004899.1:201-91125\|-	201	91125	+	90925		90534	90774/90939 (99%)	18/90939 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49055663	49066829	GA_x54KREB6MY7_6:1-3465122\|-	2606468	2617634	+	11167		NCBI_chr7_b31:48490558-48579140	48490558	48501720	AC006024.1:2001-90583\|-	79421	90583	+	11163		10983	11094/11175 (99%)	20/11175 (0%)
VARIATION	49066830	49067330					501	VARIATION	VARIATION	48501721	48502315					595	VARIATION
CRA_TCAGchr7.v1:48208175-51673296	49067331	49144138	GA_x54KREB6MY7_6:1-3465122\|-	2529159	2605966	+	76808		NCBI_chr7_b31:48490558-48579140	48502316	48579140	AC006024.1:2001-90583\|-	2001	78825	+	76825		76280	76606/76842 (99%)	51/76842 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49144139	49273774	GA_x54KREB6MY7_6:1-3465122\|-	2399523	2529158	+	129636		NCBI_chr7_b31:48579141-48708769	48579141	48708769	AC096752.4:1-129629\|+	1	129629	+	129629		129161	129468/129655 (99%)	45/129655 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49273775	49312521	GA_x54KREB6MY7_6:1-3465122\|-	2360776	2399522	+	38747		NCBI_chr7_b31:48708770-48834801	48708770	48747496	AC091730.5:1-126032\|+	1	38727	+	38727		38335	38586/38772 (99%)	70/38772 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49312472	49378491	GA_x54KREB6MY7_6:1-3465122\|-	2294806	2360825	+	66020		NCBI_chr7_b31:48708770-48834801	48747451	48813477	AC091730.5:1-126032\|+	38682	104708	+	66027		65571	65850/66039 (99%)	31/66039 (0%)
DELETION	49378484	49378491					0	DELETION	UNMATCHED	48813478	48813490					19	UNMATCHED
CRA_TCAGchr7.v1:48208175-51673296	49378484	49399779	GA_x54KREB6MY7_6:1-3465122\|-	2273518	2294813	+	21296		NCBI_chr7_b31:48708770-48834801	48813491	48834801	AC091730.5:1-126032\|+	104722	126032	+	21311		21179	21250/21311 (99%)	15/21311 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49399780	49555404	GA_x54KREB6MY7_6:1-3465122\|-	2117893	2273517	+	155625		NCBI_chr7_b31:48834802-48990454	48834802	48990454	AC010971.3:1-155653\|+	1	155653	+	155653		155033	155424/155675 (99%)	72/155675 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49555405	49657941	GA_x54KREB6MY7_6:1-3465122\|-	2015356	2117892	+	102537		NCBI_chr7_b31:48990455-49092982	48990455	49092982	AC004831.1:1-102528\|+	1	102528	+	102528		102385	102484/102543 (99%)	21/102543 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49657942	49664222	GA_x54KREB6MY7_6:1-3465122\|-	2009075	2015355	+	6281		NCBI_chr7_b31:49092983-49260770	49092983	49099256	AC092448.6:1-167788\|+	1	6274	+	6274		6191	6250/6284 (99%)	13/6284 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49664131	49666157	GA_x54KREB6MY7_6:1-3465122\|-	2007140	2009166	+	2027		NCBI_chr7_b31:49092983-49260770	49099178	49101213	AC092448.6:1-167788\|+	6196	8231	+	2036		1963	2002/2036 (98%)	9/2036 (0%)
DELETION	49666145	49666157					0	DELETION	UNMATCHED	49101214	49101518					316	UNMATCHED
CRA_TCAGchr7.v1:48208175-51673296	49666145	49688509	GA_x54KREB6MY7_6:1-3465122\|-	1984788	2007152	+	22365		NCBI_chr7_b31:49092983-49260770	49101519	49123921	AC092448.6:1-167788\|+	8537	30939	+	22403		22018	22257/22416 (99%)	64/22416 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49688019	49703044	GA_x54KREB6MY7_6:1-3465122\|-	1970253	1985278	+	15026		NCBI_chr7_b31:49092983-49260770	49123501	49138517	AC092448.6:1-167788\|+	30519	45535	+	15017		14511	14791/15031 (98%)	19/15031 (0%)
UNMATCHED	49703045	49703165					121	UNMATCHED	DELETION	49138493	49138517					0	DELETION
CRA_TCAGchr7.v1:48208175-51673296	49703166	49787079	GA_x54KREB6MY7_6:1-3465122\|-	1886218	1970131	+	83914		NCBI_chr7_b31:49092983-49260770	49138493	49222431	AC092448.6:1-167788\|+	45511	129449	+	83939		83276	83679/83957 (99%)	61/83957 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49786674	49825063	GA_x54KREB6MY7_6:1-3465122\|-	1848234	1886623	+	38390		NCBI_chr7_b31:49092983-49260770	49222379	49260770	AC092448.6:1-167788\|+	129397	167788	+	38392		38244	38338/38397 (99%)	12/38397 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49825064	49833793	GA_x54KREB6MY7_6:1-3465122\|-	1839504	1848233	+	8730		NCBI_chr7_b31:49260771-49363662	49260771	49269498	AC093775.2:1-102892\|+	1	8728	+	8728		8672	8712/8732 (99%)	6/8732 (0%)
DELETION	49833676	49833793					0	DELETION	UNMATCHED	49269499	49275035					5653	UNMATCHED
CRA_TCAGchr7.v1:48208175-51673296	49833676	49868580	GA_x54KREB6MY7_6:1-3465122\|-	1804717	1839621	+	34905		NCBI_chr7_b31:49260771-49363662	49275036	49309939	AC093775.2:1-102892\|+	14266	49169	+	34904		34861	34891/34906 (99%)	3/34906 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49868549	49922321	GA_x54KREB6MY7_6:1-3465122\|-	1750976	1804748	+	53773		NCBI_chr7_b31:49260771-49363662	49309880	49363662	AC093775.2:1-102892\|+	49110	102892	+	53783		53459	53653/53797 (99%)	38/53797 (0%)
CRA_TCAGchr7.v1:48208175-51673296	49922322	50084752	GA_x54KREB6MY7_6:1-3465122\|-	1588545	1750975	+	162431		NCBI_chr7_b31:49363663-49526120	49363663	49526120	AC034145.5:1-162458\|+	1	162458	+	162458		161921	162255/162479 (99%)	69/162479 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50084753	50094458	GA_x54KREB6MY7_6:1-3465122\|-	1578839	1588544	+	9706		NCBI_chr7_b31:49526121-49535822	49526121	49535822	AC096568.1:1-9702\|+	1	9702	+	9702		9625	9674/9708 (99%)	8/9708 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50094459	50117857	GA_x54KREB6MY7_6:1-3465122\|-	1555440	1578838	+	23399		NCBI_chr7_b31:49535823-49706550	49535823	49559219	AC034148.9:1-170728\|+	1	23397	+	23397		23316	23368/23400 (99%)	4/23400 (0%)
DELETION	50117839	50117857					0	DELETION	UNMATCHED	49559220	49559229					27	UNMATCHED
CRA_TCAGchr7.v1:48208175-51673296	50117839	50129760	GA_x54KREB6MY7_6:1-3465122\|-	1543537	1555458	+	11922		NCBI_chr7_b31:49535823-49706550	49559230	49571134	AC034148.9:1-170728\|+	23408	35312	+	11905		11285	11656/11962 (97%)	97/11962 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50128614	50265258	GA_x54KREB6MY7_6:1-3465122\|-	1408039	1544683	+	136645		NCBI_chr7_b31:49535823-49706550	49569942	49706550	AC034148.9:1-170728\|+	34120	170728	+	136609		135374	136140/136696 (99%)	138/136696 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50265259	50447840	GA_x54KREB6MY7_6:1-3465122\|-	1225457	1408038	+	182582		NCBI_chr7_b31:49706551-49889078	49706551	49889078	AC020743.7:1-182528\|+	1	182528	+	182528		181958	182343/182608 (99%)	106/182608 (0%)
UNMATCHED	50447841	50552590					104750	UNMATCHED	GAP	49889079	49939078					50000	GAP
CRA_TCAGchr7.v1:48208175-51673296	50552591	50725536	GA_x54KREB6MY7_6:1-3465122\|-	947761	1120706	+	172946		NCBI_chr7_b31:49939079-50112048	49939079	50112048	AC018705.10:1-172970\|+	1	172970	+	172970		172143	172674/173000 (99%)	84/173000 (0%)
UNMATCHED	50725537	50725538					2	UNMATCHED	DELETION	50112048	50112049					0	DELETION
CRA_TCAGchr7.v1:48208175-51673296	50725539	50756527	GA_x54KREB6MY7_6:1-3465122\|-	916770	947758	+	30989		NCBI_chr7_b31:50112049-50143012	50112049	50143012	AC080092.9:1-30964\|+	1	30964	+	30964		30819	30922/30995 (99%)	37/30995 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50756528	50880511	GA_x54KREB6MY7_6:1-3465122\|-	792786	916769	+	123984		NCBI_chr7_b31:50143013-50267003	50143013	50267003	AC005153.2:1-123991\|+	1	123991	+	123991		123303	123743/124023 (99%)	71/124023 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50880512	50885463	GA_x54KREB6MY7_6:1-3465122\|-	787834	792785	+	4952		NCBI_chr7_b31:50267004-50271955	50267004	50271955	AC007089.3:1-4952\|+	1	4952	+	4952		4938	4945/4952 (99%)	0/4952 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50885464	50887394	GA_x54KREB6MY7_6:1-3465122\|-	785903	787833	+	1931		NCBI_chr7_b31:50271956-50375176	50271956	50273886	AC004920.2:1-103221\|+	1	1931	+	1931		1917	1924/1931 (99%)	0/1931 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50887351	50988652	GA_x54KREB6MY7_6:1-3465122\|-	684645	785946	+	101302		NCBI_chr7_b31:50271956-50375176	50273869	50375176	AC004920.2:1-103221\|+	1914	103221	+	101308		100769	101098/101327 (99%)	44/101327 (0%)
CRA_TCAGchr7.v1:48208175-51673296	50988653	51021679	GA_x54KREB6MY7_6:1-3465122\|-	651618	684644	+	33027		NCBI_chr7_b31:50375177-50408199	50375177	50408199	AC009296.2:1-33023\|+	1	33023	+	33023		32964	32998/33027 (99%)	4/33027 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51021680	51105149	GA_x54KREB6MY7_6:1-3465122\|-	568148	651617	+	83470		NCBI_chr7_b31:50408200-50491674	50408200	50491674	AC004830.1:1-83475\|+	1	83475	+	83475		83276	83403/83480 (99%)	15/83480 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51105150	51163317	GA_x54KREB6MY7_6:1-3465122\|-	509980	568147	+	58168		NCBI_chr7_b31:50491675-50606519	50491675	50549889	AC004414.1:1-114845\|+	1	58215	+	58215		57790	58048/58231 (99%)	79/58231 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51159052	51219931	GA_x54KREB6MY7_6:1-3465122\|-	453366	514245	+	60880		NCBI_chr7_b31:50491675-50606519	50545626	50606519	AC004414.1:1-114845\|+	53952	114845	+	60894		60514	60758/60927 (99%)	80/60927 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51219932	51301747	GA_x54KREB6MY7_6:1-3465122\|-	371550	453365	+	81816		NCBI_chr7_b31:50606520-50697892	50606520	50688310	AC012372.4:1-91373\|+	1	81791	+	81791		81601	81732/81818 (99%)	29/81818 (0%)
DELETION	51301728	51301747					0	DELETION	UNMATCHED	50688311	50688314					22	UNMATCHED
CRA_TCAGchr7.v1:48208175-51673296	51301728	51311306	GA_x54KREB6MY7_6:1-3465122\|-	361991	371569	+	9579		NCBI_chr7_b31:50606520-50697892	50688315	50697892	AC012372.4:1-91373\|+	81796	91373	+	9578		9570	9577/9579 (99%)	1/9579 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51311307	51468952	GA_x54KREB6MY7_6:1-3465122\|-	204345	361990	+	157646		NCBI_chr7_b31:50697893-50855505	50697893	50855505	AC005535.2:1-157613\|+	1	157613	+	157613		157033	157432/157671 (99%)	83/157671 (0%)
CRA_TCAGchr7.v1:48208175-51673296	51468953	51538939	GA_x54KREB6MY7_6:1-3465122\|-	134358	204344	+	69987		NCBI_chr7_b31:50855506-50925489	50855506	50925489	AC012441.3:1-69984\|+	1	69984	+	69984		69834	69937/69995 (99%)	19/69995 (0%)
CRA_TCAGchr7.v1:51538940-51606711	51538940	51606711					67772		NCBI_chr7_b31:50925490-50993240	50925490	50993240					67751
CRA_TCAGchr7.v1:48208175-51673296	51606712	51622258	GA_x54KREB6MY7_6:1-3465122\|-	51039	66585	+	15547		NCBI_chr7_b31:50925490-51043922	50993241	51008790	AC073193.10:1-118433\|+	67752	83301	+	15550		15489	15527/15550 (99%)	3/15550 (0%)
VARIATION	51622259	51622379					121	VARIATION	VARIATION	51008791	51009416					626	VARIATION
CRA_TCAGchr7.v1:48208175-51673296	51622380	51656888	GA_x54KREB6MY7_6:1-3465122\|-	16409	50917	+	34509		NCBI_chr7_b31:50925490-51043922	51009417	51043922	AC073193.10:1-118433\|+	83928	118433	+	34506		34313	34430/34512 (99%)	9/34512 (0%)
UNMATCHED	51656889	51656890					2	UNMATCHED	DELETION	51043922	51043923					0	DELETION
CRA_TCAGchr7.v1:48208175-51673296	51656891	51673296	GA_x54KREB6MY7_6:1-3465122\|-	1	16406	+	16406		NCBI_chr7_b31:51043923-51092143	51043923	51060328	AC092441.4:1-48221\|+	1	16406	+	16406		16394	16400/16406 (99%)	0/16406 (0%)
CRA_TCAGchr7.v1:51673297-53217371	51673297	51705108	GA_x54KREB72W2_6:12762-1556836\|+	12762	44573	+	31812		NCBI_chr7_b31:51043923-51092143	51060329	51092143	AC092441.4:1-48221\|+	16407	48221	+	31815		31685	31764/31818 (99%)	9/31818 (0%)
CRA_TCAGchr7.v1:51673297-53217371	51705109	51751234	GA_x54KREB72W2_6:12762-1556836\|+	44574	90699	+	46126		NCBI_chr7_b31:51092144-51227670	51092144	51138261	AC005999.2:1-135527\|+	1	46118	+	46118		45865	46034/46143 (99%)	42/46143 (0%)
CRA_TCAGchr7.v1:51673297-53217371	51751186	51840690	GA_x54KREB72W2_6:12762-1556836\|+	90651	180155	+	89505		NCBI_chr7_b31:51092144-51227670	51138156	51227670	AC005999.2:1-135527\|+	46013	135527	+	89515		89354	89458/89517 (99%)	14/89517 (0%)
CRA_TCAGchr7.v1:51673297-53217371	51840691	51856001	GA_x54KREB72W2_6:12762-1556836\|+	180156	195466	+	15311		NCBI_chr7_b31:51227671-51242973	51227671	51242973	AC018701.3:1-15303\|+	1	15303	+	15303		15214	15274/15314 (99%)	14/15314 (0%)
CRA_TCAGchr7.v1:51673297-53217371	51856002	52006047	GA_x54KREB72W2_6:12762-1556836\|+	195467	345512	+	150046		NCBI_chr7_b31:51242974-51414958	51242974	51392960	AC006478.2:1-171985\|+	1	149987	+	149987		149611	149873/150055 (99%)	77/150055 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52006048	52028159	GA_x54KREB72W2_6:12762-1556836\|+	345513	367624	+	22112		NCBI_chr7_b31:51242974-51414958	51392849	51414958	AC006478.2:1-171985\|+	149876	171985	+	22110		21940	22041/22117 (99%)	12/22117 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52028160	52044197	GA_x54KREB72W2_6:12762-1556836\|+	367625	383662	+	16038		NCBI_chr7_b31:51414959-51435228	51414959	51430996	AC022458.3:1-20270\|+	1	16038	+	16038		16036	16037/16038 (99%)	0/16038 (0%)
UNMATCHED	52044198	52044238					41	UNMATCHED	DELETION	51430996	51430997					0	DELETION
CRA_TCAGchr7.v1:51673297-53217371	52044239	52048470	GA_x54KREB72W2_6:12762-1556836\|+	383704	387935	+	4232		NCBI_chr7_b31:51414959-51435228	51430997	51435228	AC022458.3:1-20270\|+	16039	20270	+	4232		4232	4232/4232 (100%)	0/4232 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52048471	52167565	GA_x54KREB72W2_6:12762-1556836\|+	387936	507030	+	119095		NCBI_chr7_b31:51435229-51615375	51435229	51554305	AC009415.2:1-180147\|+	1	119077	+	119077		118407	118847/119132 (99%)	92/119132 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52167504	52172105	GA_x54KREB72W2_6:12762-1556836\|+	506969	511570	+	4602		NCBI_chr7_b31:51435229-51615375	51554263	51558866	AC009415.2:1-180147\|+	119035	123638	+	4604		4551	4580/4604 (99%)	2/4604 (0%)
DELETION	52172094	52172105					0	DELETION	UNMATCHED	51558867	51559167					311	UNMATCHED
CRA_TCAGchr7.v1:51673297-53217371	52172094	52228304	GA_x54KREB72W2_6:12762-1556836\|+	511559	567769	+	56211		NCBI_chr7_b31:51435229-51615375	51559168	51615375	AC009415.2:1-180147\|+	123940	180147	+	56208		56181	56201/56211 (99%)	3/56211 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52228305	52228547	GA_x54KREB72W2_6:12762-1556836\|+	567770	568012	+	243		NCBI_chr7_b31:51615376-51615618	51615376	51615618	AC082648.6:1-243\|+	1	243	+	243		243	243/243 (100%)	0/243 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52228548	52334353	GA_x54KREB72W2_6:12762-1556836\|+	568013	673818	+	105806		NCBI_chr7_b31:51615619-51771466	51615619	51721452	AC079763.7:1-155848\|+	1	105834	+	105834		105072	105524/105861 (99%)	82/105861 (0%)
VARIATION	52334354	52336617					2264	VARIATION	VARIATION	51721453	51723506					2054	VARIATION
CRA_TCAGchr7.v1:51673297-53217371	52336618	52384576	GA_x54KREB72W2_6:12762-1556836\|+	676083	724041	+	47959		NCBI_chr7_b31:51615619-51771466	51723507	51771466	AC079763.7:1-155848\|+	107889	155848	+	47960		47722	47876/47975 (99%)	31/47975 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52384577	52479166	GA_x54KREB72W2_6:12762-1556836\|+	724042	818631	+	94590		NCBI_chr7_b31:51771467-51866059	51771467	51866059	AC006320.4:201-94793\|-	201	94793	+	94593		94483	94562/94601 (99%)	19/94601 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52479167	52597182	GA_x54KREB72W2_6:12762-1556836\|+	818632	936647	+	118016		NCBI_chr7_b31:51866060-52052840	51866060	51984068	AC006459.3:201-186981\|-	68973	186981	+	118009		117174	117709/118054 (99%)	83/118054 (0%)
DELETION	52597178	52597182					0	DELETION	UNMATCHED	51984069	51984265					200	UNMATCHED
CRA_TCAGchr7.v1:51673297-53217371	52597178	52609103	GA_x54KREB72W2_6:12762-1556836\|+	936643	948568	+	11926		NCBI_chr7_b31:51866060-52052840	51984266	51996191	AC006459.3:201-186981\|-	56850	68775	+	11926		11849	11896/11928 (99%)	4/11928 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52609103	52631718	GA_x54KREB72W2_6:12762-1556836\|+	948568	971183	+	22616	INVERSION	NCBI_chr7_b31:51866060-52052840	51986346	52008961	AC006459.3:201-186981\|-	44080	66695	-	22616	INVERSION	22604	22610/22616 (99%)	0/22616 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52631704	52688279	GA_x54KREB72W2_6:12762-1556836\|+	971169	1027744	+	56576		NCBI_chr7_b31:51866060-52052840	51996190	52052840	AC006459.3:201-186981\|-	201	56851	+	56651		56052	56389/56661 (99%)	95/56661 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52688280	52732075	GA_x54KREB72W2_6:12762-1556836\|+	1027745	1071540	+	43796		NCBI_chr7_b31:52052841-52119166	52052841	52096633	AC011283.3:2001-68326\|-	24534	68326	+	43793		43648	43742/43801 (99%)	13/43801 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52731790	52754644	GA_x54KREB72W2_6:12762-1556836\|+	1071255	1094109	+	22855		NCBI_chr7_b31:52052841-52119166	52096314	52119166	AC011283.3:2001-68326\|-	2001	24853	+	22853		22627	22766/22870 (99%)	32/22870 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52754645	52798438	GA_x54KREB72W2_6:12762-1556836\|+	1094110	1137903	+	43794		NCBI_chr7_b31:52119167-52162985	52119167	52162985	AC091650.4:1-43819\|+	1	43819	+	43819		43597	43739/43826 (99%)	39/43826 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52798439	52863822	GA_x54KREB72W2_6:12762-1556836\|+	1137904	1203287	+	65384		NCBI_chr7_b31:52162986-52228365	52162986	52228365	AC074263.5:1-65380\|+	1	65380	+	65380		64966	65237/65413 (99%)	62/65413 (0%)
CRA_TCAGchr7.v1:51673297-53217371	52863823	53033276	GA_x54KREB72W2_6:12762-1556836\|+	1203288	1372741	+	169454		NCBI_chr7_b31:52228366-52397822	52228366	52397822	AC010125.4:1-169457\|+	1	169457	+	169457		169107	169335/169478 (99%)	45/169478 (0%)
CRA_TCAGchr7.v1:51673297-53217371	53033277	53055225	GA_x54KREB72W2_6:12762-1556836\|+	1372742	1394690	+	21949		NCBI_chr7_b31:52397823-52467424	52397823	52419763	AC092105.6:1-69602\|+	1	21941	+	21941		21853	21911/21949 (99%)	8/21949 (0%)
CRA_TCAGchr7.v1:51673297-53217371	53055196	53102899	GA_x54KREB72W2_6:12762-1556836\|+	1394661	1442364	+	47704		NCBI_chr7_b31:52397823-52467424	52419710	52467424	AC092105.6:1-69602\|+	21888	69602	+	47715		47435	47623/47726 (99%)	33/47726 (0%)
CRA_TCAGchr7.v1:51673297-53217371	53102900	53124049	GA_x54KREB72W2_6:12762-1556836\|+	1442365	1463514	+	21150		NCBI_chr7_b31:52467425-52581800	52467425	52488565	AC074397.7:1-114376\|+	1	21141	+	21141		21035	21100/21150 (99%)	9/21150 (0%)
UNMATCHED	53124050	53124080					31	UNMATCHED	DELETION	52488565	52488565					0	DELETION
CRA_TCAGchr7.v1:51673297-53217371	53124081	53212839	GA_x54KREB72W2_6:12762-1556836\|+	1463546	1552304	+	88759		NCBI_chr7_b31:52467425-52581800	52488565	52577293	AC074397.7:1-114376\|+	21141	109869	+	88729		88366	88618/88775 (99%)	62/88775 (0%)
CRA_TCAGchr7.v1:51673297-53217371	53212826	53217371	GA_x54KREB72W2_6:12762-1556836\|+	1552291	1556836	+	4546		NCBI_chr7_b31:52467425-52581800	52577255	52581800	AC074397.7:1-114376\|+	109831	114376	+	4546		4540	4543/4546 (99%)	0/4546 (0%)
CRA_TCAGchr7.v1:53217372-53379831	53217372	53377831	AC073318.8:1-162460\|+	1	160460	+	160460		NCBI_chr7_b31:52581801-52742260	52581801	52742260	AC073318.8:1-160460\|+	1	160460	+	160460		160460	160460/160460 (100%)	0/160460 (0%)
CRA_TCAGchr7.v1:53217372-53379831	53377832	53379831	AC073318.8:1-162460\|+	160461	162460	+	2000		NCBI_chr7_b31:52742261-52876172	52742261	52744260	AC092208.6:1-133912\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53379832	53384184	GA_x54KREB72Y9_3:67820-2453186\|+	67820	72172	+	4353		NCBI_chr7_b31:52742261-52876172	52744261	52748612	AC092208.6:1-133912\|+	2001	6352	+	4352		4288	4323/4353 (99%)	1/4353 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53384065	53475456	GA_x54KREB72Y9_3:67820-2453186\|+	72053	163444	+	91392		NCBI_chr7_b31:52742261-52876172	52748534	52839921	AC092208.6:1-133912\|+	6274	97661	+	91388		90999	91253/91417 (99%)	54/91417 (0%)
VARIATION	53475457	53475467					11	VARIATION	VARIATION	52839922	52839971					50	VARIATION
CRA_TCAGchr7.v1:53379832-55765198	53475468	53511666	GA_x54KREB72Y9_3:67820-2453186\|+	163456	199654	+	36199		NCBI_chr7_b31:52742261-52876172	52839972	52876172	AC092208.6:1-133912\|+	97712	133912	+	36201		36140	36179/36203 (99%)	6/36203 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53511667	53589692	GA_x54KREB72Y9_3:67820-2453186\|+	199655	277680	+	78026		NCBI_chr7_b31:52876173-52990392	52876173	52954203	AC007735.2:2001-116220\|-	38190	116220	+	78031		77954	78000/78031 (99%)	5/78031 (0%)
DELETION	53589689	53589692					0	DELETION	UNMATCHED	52954204	52954221					20	UNMATCHED
CRA_TCAGchr7.v1:53379832-55765198	53589689	53625865	GA_x54KREB72Y9_3:67820-2453186\|+	277677	313853	+	36177		NCBI_chr7_b31:52876173-52990392	52954222	52990392	AC007735.2:2001-116220\|-	2001	38171	+	36171		36034	36120/36181 (99%)	14/36181 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53625866	53628807	GA_x54KREB72Y9_3:67820-2453186\|+	313854	316795	+	2942		NCBI_chr7_b31:52990393-52993334	52990393	52993334	AC092462.2:1-2942\|+	1	2942	+	2942		2938	2940/2942 (99%)	0/2942 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53628808	53781116	GA_x54KREB72Y9_3:67820-2453186\|+	316796	469104	+	152309		NCBI_chr7_b31:52993335-53145651	52993335	53145651	AC009468.3:1-152317\|+	1	152317	+	152317		151530	152018/152351 (99%)	76/152351 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53781117	53935613	GA_x54KREB72Y9_3:67820-2453186\|+	469105	623601	+	154497		NCBI_chr7_b31:53145652-53300157	53145652	53300157	AC007964.3:1-154506\|+	1	154506	+	154506		154194	154407/154530 (99%)	57/154530 (0%)
CRA_TCAGchr7.v1:53379832-55765198	53935614	54058986	GA_x54KREB72Y9_3:67820-2453186\|+	623602	746974	+	123373		NCBI_chr7_b31:53300158-53455668	53300158	53423530	AC074348.6:1-155511\|+	1	123373	+	123373		123249	123329/123379 (99%)	12/123379 (0%)
UNMATCHED	54058987	54059366					380	UNMATCHED	DELETION	53423527	53423530					0	DELETION
CRA_TCAGchr7.v1:53379832-55765198	54059367	54091508	GA_x54KREB72Y9_3:67820-2453186\|+	747355	779496	+	32142		NCBI_chr7_b31:53300158-53455668	53423527	53455668	AC074348.6:1-155511\|+	123370	155511	+	32142		32079	32119/32144 (99%)	4/32144 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54091509	54093502	GA_x54KREB72Y9_3:67820-2453186\|+	779497	781490	+	1994		NCBI_chr7_b31:53455669-53457662	53455669	53457662	AC093715.4:1-1994\|+	1	1994	+	1994		1994	1994/1994 (100%)	0/1994 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54093503	54173202	GA_x54KREB72Y9_3:67820-2453186\|+	781491	861190	+	79700		NCBI_chr7_b31:53457663-53537356	53457663	53537356	AC073521.5:1-79694\|+	1	79694	+	79694		79376	79585/79719 (99%)	44/79719 (0%)
CRA_TCAGchr7.v1:54173203-54352792	54173203	54352792					179590		NCBI_chr7_b31:53537357-53716957	53537357	53716957					179601
CRA_TCAGchr7.v1:53379832-55765198	54352793	54359997	GA_x54KREB72Y9_3:67820-2453186\|+	1040781	1047985	+	7205		NCBI_chr7_b31:53537357-53724160	53716958	53724160	AC073125.5:1-186804\|+	179602	186804	+	7203		7144	7177/7205 (99%)	2/7205 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54359998	54424778	GA_x54KREB72Y9_3:67820-2453186\|+	1047986	1112766	+	64781		NCBI_chr7_b31:53724161-53788936	53724161	53788936	AC092848.3:1-64776\|+	1	64776	+	64776		64607	64704/64781 (99%)	5/64781 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54424779	54499920	GA_x54KREB72Y9_3:67820-2453186\|+	1112767	1187908	+	75142		NCBI_chr7_b31:53788937-53864078	53788937	53864078	AC096658.1:1-75142\|+	1	75142	+	75142		75109	75131/75143 (99%)	2/75143 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54499921	54637619	GA_x54KREB72Y9_3:67820-2453186\|+	1187909	1325607	+	137699		NCBI_chr7_b31:53864079-54001767	53864079	54001767	AC073269.7:1-137689\|+	1	137689	+	137689		137324	137534/137704 (99%)	20/137704 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54637620	54738113	GA_x54KREB72Y9_3:67820-2453186\|+	1325608	1426101	+	100494		NCBI_chr7_b31:54001768-54102246	54001768	54102246	AC069313.5:1-100479\|+	1	100479	+	100479		100239	100388/100497 (99%)	21/100497 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54738114	54835732	GA_x54KREB72Y9_3:67820-2453186\|+	1426102	1523720	+	97619		NCBI_chr7_b31:54102247-54266028	54102247	54199876	AC011228.9:1-163782\|+	1	97630	+	97630		97157	97457/97647 (99%)	45/97647 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54834991	54901846	GA_x54KREB72Y9_3:67820-2453186\|+	1522979	1589834	+	66856		NCBI_chr7_b31:54102247-54266028	54199170	54266028	AC011228.9:1-163782\|+	96924	163782	+	66859		66182	66599/66911 (99%)	107/66911 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54901847	54916772	GA_x54KREB72Y9_3:67820-2453186\|+	1589835	1604760	+	14926		NCBI_chr7_b31:54266029-54280954	54266029	54280954	AC019210.7:162277-177202\|+	162277	177202	+	14926		14922	14924/14926 (99%)	0/14926 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54916773	54984051	GA_x54KREB72Y9_3:67820-2453186\|+	1604761	1672039	+	67279		NCBI_chr7_b31:54280955-54348247	54280955	54348247	AC074351.8:1-67293\|+	1	67293	+	67293		67022	67202/67302 (99%)	32/67302 (0%)
CRA_TCAGchr7.v1:53379832-55765198	54984052	55061629	GA_x54KREB72Y9_3:67820-2453186\|+	1672040	1749617	+	77578		NCBI_chr7_b31:54348248-54425816	54348248	54425816	AC092449.2:1-77569\|+	1	77569	+	77569		77466	77537/77578 (99%)	9/77578 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55061630	55134041	GA_x54KREB72Y9_3:67820-2453186\|+	1749618	1822029	+	72412		NCBI_chr7_b31:54425817-54541477	54425817	54498236	AC006971.2:1-115661\|+	1	72420	+	72420		72264	72353/72422 (99%)	12/72422 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55134040	55177311	GA_x54KREB72Y9_3:67820-2453186\|+	1822028	1865299	+	43272		NCBI_chr7_b31:54425817-54541477	54498208	54541477	AC006971.2:1-115661\|+	72392	115661	+	43270		43090	43208/43281 (99%)	20/43281 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55177312	55355117	GA_x54KREB72Y9_3:67820-2453186\|+	1865300	2043105	+	177806		NCBI_chr7_b31:54541478-54719275	54541478	54719275	AC006977.3:1-177798\|+	1	177798	+	177798		177522	177701/177815 (99%)	26/177815 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55355118	55387000	GA_x54KREB72Y9_3:67820-2453186\|+	2043106	2074988	+	31883		NCBI_chr7_b31:54719276-54844328	54719276	54751143	AC073324.6:1-125053\|+	1	31868	+	31868		31612	31773/31889 (99%)	27/31889 (0%)
VARIATION	55387001	55387320					320	VARIATION	VARIATION	54751144	54752915					1772	VARIATION
CRA_TCAGchr7.v1:53379832-55765198	55387321	55403753	GA_x54KREB72Y9_3:67820-2453186\|+	2075309	2091741	+	16433		NCBI_chr7_b31:54719276-54844328	54752916	54769348	AC073324.6:1-125053\|+	33641	50073	+	16433		16380	16412/16434 (99%)	2/16434 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55403554	55478662	GA_x54KREB72Y9_3:67820-2453186\|+	2091542	2166650	+	75109		NCBI_chr7_b31:54719276-54844328	54769214	54844328	AC073324.6:1-125053\|+	49939	125053	+	75115		74890	75033/75121 (99%)	18/75121 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55478663	55600901	GA_x54KREB72Y9_3:67820-2453186\|+	2166651	2288889	+	122239		NCBI_chr7_b31:54844329-55041272	54844329	54966577	AC073347.3:1-196944\|+	1	122249	+	122249		121918	122128/122263 (99%)	38/122263 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55600896	55762165	GA_x54KREB72Y9_3:67820-2453186\|+	2288884	2450153	+	161270		NCBI_chr7_b31:54844329-55041272	54876932	55038238	AC073347.3:1-196944\|+	32604	193910	+	161307		160410	160976/161352 (99%)	127/161352 (0%)
CRA_TCAGchr7.v1:53379832-55765198	55761152	55765198	GA_x54KREB72Y9_3:67820-2453186\|+	2449140	2453186	+	4047		NCBI_chr7_b31:54844329-55041272	55037225	55041272	AC073347.3:1-196944\|+	192897	196944	+	4048		4021	4037/4048 (99%)	1/4048 (0%)
CRA_TCAGchr7.v1:55765199-55819489	55765199	55817489	AC073237.3:1-54291\|+	1	52291	+	52291		NCBI_chr7_b31:55041273-55093563	55041273	55093563	AC073237.3:1-52291\|+	1	52291	+	52291		52291	52291/52291 (100%)	0/52291 (0%)
CRA_TCAGchr7.v1:55765199-55819489	55817490	55819489	AC073237.3:1-54291\|+	52292	54291	+	2000		NCBI_chr7_b31:55093564-55189350	55093564	55095563	AC099681.4:1-95787\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:55819490-55915276	55819490	55913276	AC099681.4:2001-97787\|+	2001	95787	+	93787		NCBI_chr7_b31:55093564-55189350	55095564	55189350	AC099681.4:1-95787\|+	2001	95787	+	93787		93787	93787/93787 (100%)	0/93787 (0%)
CRA_TCAGchr7.v1:55819490-55915276	55913277	55915276	AC099681.4:2001-97787\|+	95788	97787	+	2000		NCBI_chr7_b31:55189351-55310293	55189351	55191329	AC091812.4:1-120943\|+	1	1979	+	1979		1941	1973/2000 (98%)	21/2000 (1%)
CRA_TCAGchr7.v1:55915277-56036240	55915277	56034240	AC091812.4:1980-122943\|+	1980	120943	+	118964		NCBI_chr7_b31:55189351-55310293	55191330	55310293	AC091812.4:1-120943\|+	1980	120943	+	118964		118964	118964/118964 (100%)	0/118964 (0%)
CRA_TCAGchr7.v1:55915277-56036240	56034241	56036240	AC091812.4:1980-122943\|+	120944	122943	+	2000		NCBI_chr7_b31:55310294-55472184	55310294	55312293	AC092647.2:1-161891\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:56036241-56198131	56036241	56196131	AC092647.2:2001-163891\|+	2001	161891	+	159891		NCBI_chr7_b31:55310294-55472184	55312294	55472184	AC092647.2:1-161891\|+	2001	161891	+	159891		159891	159891/159891 (100%)	0/159891 (0%)
CRA_TCAGchr7.v1:56036241-56198131	56196132	56198131	AC092647.2:2001-163891\|+	161892	163891	+	2000		NCBI_chr7_b31:55472185-55589142	55472185	55474184	AC092579.3:1-116958\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:56198132-56315089	56198132	56313089	AC092579.3:2001-118958\|+	2001	116958	+	114958		NCBI_chr7_b31:55472185-55589142	55474185	55589142	AC092579.3:1-116958\|+	2001	116958	+	114958		114958	114958/114958 (100%)	0/114958 (0%)
CRA_TCAGchr7.v1:56198132-56315089	56313090	56315089	AC092579.3:2001-118958\|+	116959	118958	+	2000		NCBI_chr7_b31:55589143-55626017	55589143	55591142	AC092101.5:1-36875\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:56315090-56351964	56315090	56349964	AC092101.5:2001-38875\|+	2001	36875	+	34875		NCBI_chr7_b31:55589143-55626017	55591143	55626017	AC092101.5:1-36875\|+	2001	36875	+	34875		34875	34875/34875 (100%)	0/34875 (0%)
CRA_TCAGchr7.v1:56315090-56351964	56349965	56351964	AC092101.5:2001-38875\|+	36876	38875	+	2000		NCBI_chr7_b31:55626018-55761915	55626018	55628008	AC006970.6:1-135898\|+	1	1991	+	1991		1934	1977/2005 (98%)	19/2005 (0%)
CRA_TCAGchr7.v1:56351965-56486071	56351965	56485871	AC006970.6:1992-136098\|+	1992	135898	+	133907		NCBI_chr7_b31:55626018-55761915	55628009	55761915	AC006970.6:1-135898\|+	1992	135898	+	133907		133907	133907/133907 (100%)	0/133907 (0%)
CRA_TCAGchr7.v1:56351965-56486071	56485872	56486071	AC006970.6:1992-136098\|+	135899	136098	+	200		NCBI_chr7_b31:55761916-55840711	55761916	55762115	AC073136.6:1-78796\|+	1	200	+	200		200	200/200 (100%)	0/200 (0%)
CRA_TCAGchr7.v1:56486072-56566667	56486072	56564667	AC073136.6:201-80796\|+	201	78796	+	78596		NCBI_chr7_b31:55761916-55840711	55762116	55840711	AC073136.6:1-78796\|+	201	78796	+	78596		78596	78596/78596 (100%)	0/78596 (0%)
CRA_TCAGchr7.v1:56486072-56566667	56564668	56566667	AC073136.6:201-80796\|+	78797	80796	+	2000		NCBI_chr7_b31:55840712-55938308	55840712	55842711	AC093392.4:1-97597\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:56566668-56664264	56566668	56662264	AC093392.4:2001-99597\|+	2001	97597	+	95597		NCBI_chr7_b31:55840712-55938308	55842712	55938308	AC093392.4:1-97597\|+	2001	97597	+	95597		95597	95597/95597 (100%)	0/95597 (0%)
CRA_TCAGchr7.v1:56566668-56664264	56662265	56664264	AC093392.4:2001-99597\|+	97598	99597	+	2000		NCBI_chr7_b31:55938309-55961243	55938309	55940308	AC092423.5:1-22935\|+	1	2000	+	2000		1998	1999/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:56664265-56687199	56664265	56685199	AC092423.5:2001-24935\|+	2001	22935	+	20935		NCBI_chr7_b31:55938309-55961243	55940309	55961243	AC092423.5:1-22935\|+	2001	22935	+	20935		20935	20935/20935 (100%)	0/20935 (0%)
CRA_TCAGchr7.v1:56664265-56687199	56685200	56687199	AC092423.5:2001-24935\|+	22936	24935	+	2000		NCBI_chr7_b31:55961244-56135790	55961244	55963243	AC092447.5:1-174547\|+	1	2000	+	2000		1998	1999/2000 (99%)	0/2000 (0%)
CRA_TCAGchr7.v1:56687200-56861746	56687200	56859746	AC092447.5:2001-176547\|+	2001	174547	+	172547		NCBI_chr7_b31:55961244-56135790	55963244	56135790	AC092447.5:1-174547\|+	2001	174547	+	172547		172547	172547/172547 (100%)	0/172547 (0%)
CRA_TCAGchr7.v1:56687200-56861746	56859747	56861746	AC092447.5:2001-176547\|+	174548	176547	+	2000		NCBI_chr7_b31:56135791-56299456	56135791	56137790	AC095038.3:1-163666\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:56861747-57152262	56861747	56989120	GA_x5HB7VC7SFH_3:95227-385742\|+	95227	222600	+	127374		NCBI_chr7_b31:56135791-56299456	56137791	56265153	AC095038.3:1-163666\|+	2001	129363	+	127363		126846	127185/127394 (99%)	51/127394 (0%)
VARIATION	56989121	57022465					33345	VARIATION	VARIATION	56265154	56294147					28994	VARIATION
CRA_TCAGchr7.v1:56861747-57152262	57022466	57027758	GA_x5HB7VC7SFH_3:95227-385742\|+	255946	261238	+	5293		NCBI_chr7_b31:56135791-56299456	56294148	56299456	AC095038.3:1-163666\|+	158358	163666	+	5309		5126	5237/5313 (98%)	24/5313 (0%)
CRA_TCAGchr7.v1:56861747-57152262	57024862	57027263	GA_x5HB7VC7SFH_3:95227-385742\|+	258342	260743	+	2402		NCBI_chr7_b31:56399857-56550669	56399857	56402262	AC118758.3:1-150813\|+	1	2406	+	2406		2272	2358/2409 (97%)	10/2409 (0%)
NO_GAP	57024862	57027758					2897	NO_GAP	GAP	56299457	56399856					100400	GAP
CRA_TCAGchr7.v1:56861747-57152262	57027240	57030380	GA_x5HB7VC7SFH_3:95227-385742\|+	260720	263860	+	3141		NCBI_chr7_b31:56399857-56550669	56402104	56405247	AC118758.3:1-150813\|+	2248	5391	+	3144		3031	3096/3146 (98%)	7/3146 (0%)
CRA_TCAGchr7.v1:56861747-57152262	57030379	57031472	GA_x5HB7VC7SFH_3:95227-385742\|+	263859	264952	+	1094		NCBI_chr7_b31:56399857-56550669	56405225	56406318	AC118758.3:1-150813\|+	5369	6462	+	1094		1084	1089/1094 (99%)	0/1094 (0%)
DELETION	57031472	57031473					0	DELETION	UNMATCHED	56406319	56408416					2098	UNMATCHED
CRA_TCAGchr7.v1:56861747-57152262	57031473	57032009	GA_x5HB7VC7SFH_3:95227-385742\|+	264953	265489	+	537		NCBI_chr7_b31:56399857-56550669	56408417	56408953	AC118758.3:1-150813\|+	8561	9097	+	537		537	537/537 (100%)	0/537 (0%)
CRA_TCAGchr7.v1:56861747-57152262	57032010	57044526	GA_x5HB7VC7SFH_3:95227-385742\|+	265490	278006	+	12517		NCBI_chr7_b31:56399857-56550669	56408418	56420960	AC118758.3:1-150813\|+	8562	21104	+	12543		11985	12315/12560 (98%)	60/12560 (0%)
VARIATION	57044527	57084196					39670	VARIATION	VARIATION	56420961	56459378					38418	VARIATION
CRA_TCAGchr7.v1:56861747-57152262	57084197	57152262	GA_x5HB7VC7SFH_3:95227-385742\|+	317677	385742	+	68066		NCBI_chr7_b31:56399857-56550669	56459379	56527414	AC118758.3:1-150813\|+	59523	127558	+	68036		66475	67447/68159 (98%)	216/68159 (0%)
CRA_TCAGchr7.v1:57152263-57175518	57152263	57175518	AC118758.3:127558-150813\|+	127558	150813	+	23256		NCBI_chr7_b31:56399857-56550669	56527414	56550669	AC118758.3:1-150813\|+	127558	150813	+	23256		23256	23256/23256 (100%)	0/23256 (0%)
UNMATCHED	57175519	57386833					211315	UNMATCHED	GAP	56550670	56600669					50000	GAP
CRA_TCAGchr7.v1:57386834-57534090	57386834	57534090	AC099654.4:1-147257\|+	1	147257	+	147257		NCBI_chr7_b31:56600670-56747928	56600670	56747928	AC099654.5:1-147259\|+	1	147259	+	147259		147228	147246/147259 (99%)	2/147259 (0%)
CRA_TCAGchr7.v1:57534091-57712195	57534091	57710195	AC073057.6:1-178105\|+	1	176105	+	176105		NCBI_chr7_b31:56747929-56924033	56747929	56924033	AC073057.6:1-176105\|+	1	176105	+	176105		176105	176105/176105 (100%)	0/176105 (0%)
CRA_TCAGchr7.v1:57534091-57712195	57710196	57712195	AC073057.6:1-178105\|+	176106	178105	+	2000		NCBI_chr7_b31:56924034-56991750	56924034	56926033	AC092175.5:1-67717\|+	1	2000	+	2000		2000	2000/2000 (100%)	0/2000 (0%)
CRA_TCAGchr7.v1:57712196-57810840	57712196	57777912	AC092175.5:2001-100645\|+	2001	67717	+	65717		NCBI_chr7_b31:56924034-56991750	56926034	56991750	AC092175.5:1-67717\|+	2001	67717	+	65717		65717	65717/65717 (100%)	0/65717 (0%)
CRA_TCAGchr7.v1:57712196-57810840	57777913	57810840	AC092175.5:2001-100645\|+	67718	100645	+	32928		NCBI_chr7_b31:56991751-57165645	56991751	57024681	AC064862.6:2001-175895\|-	142965	175895	+	32931		32693	32862/32946 (99%)	33/32946 (0%)
CRA_TCAGchr7.v1:57810841-57953804	57810841	57951804	AC064862.6:1-142964\|-	2001	142964	+	140964		NCBI_chr7_b31:56991751-57165645	57024682	57165645	AC064862.6:2001-175895\|-	2001	142964	+	140964		140964	140964/140964 (100%)	0/140964 (0%)
CRA_TCAGchr7.v1:57810841-57953804	57951805	57953798	AC064862.6:1-142964\|-	7	2000	+	1994		NCBI_chr7_b31:57165646-57167639	57165646	57167639	AC103878.4:1-1994\|+	1	1994	+	1994		1994	1994/1994 (100%)	0/1994 (0%)
VARIATION	57953799	57953804					6	VARIATION	VARIATION	57167640	57167645					6	VARIATION
CRA_TCAGchr7.v1:57953805-57955798	57953805	57955798	AC103878.4:2001-3994\|+	2001	3994	+	1994		NCBI_chr7_b31:57167640-57365276	57167646	57169639	AC023141.6:1-197637\|+	7	2000	+	1994		1992	1993/1994 (99%)	0/1994 (0%)
CRA_TCAGchr7.v1:57955799-58151435	57955799	58151435	AC023141.6:2001-197637\|+	2001	197637	+	195637		NCBI_chr7_b31:57167640-57365276	57169640	57365276	AC023141.6:1-197637\|+	2001	197637	+	195637		195637	195637/195637 (100%)	0/195637 (0%)
NO_GAP	58151435	58151436					0	NO_GAP	CENTROMERE	57365277	60365276					3000000	CENTROMERE
CRA_TCAGchr7.v1:58151436-58344712	58151436	58344712	AC017075.8:1-193277\|+	1	193277	+	193277		NCBI_chr7_b31:60365277-60558553	60365277	60558553	AC017075.8:1-193277\|+	1	193277	+	193277		193277	193277/193277 (100%)	0/193277 (0%)
CENTROMERE	58344713	61044712					2700000	CENTROMERE	GAP	60558554	60608553					50000	GAP
CRA_TCAGchr7.v1:61044713-61229994	61044713	61229994	AC019063.4:2001-187282\|-	2001	187282	+	185282		NCBI_chr7_b31:60608554-60793835	60608554	60793835	AC019063.4:2001-187282\|-	2001	187282	+	185282		185282	185282/185282 (100%)	0/185282 (0%)
CRA_TCAGchr7.v1:61229995-61266885	61229995	61266885	AC110784.3:1-36891\|+	1	36891	+	36891		NCBI_chr7_b31:60793836-60830726	60793836	60830726	AC110784.3:1-36891\|+	1	36891	+	36891		36891	36891/36891 (100%)	0/36891 (0%)
CRA_TCAGchr7.v1:61266886-61290392	61266886	61290392	AC118943.2:1-23507\|+	1	23507	+	23507		NCBI_chr7_b31:60830727-60854233	60830727	60854233	AC118943.2:1-23507\|+	1	23507	+	23507		23507	23507/23507 (100%)	0/23507 (0%)
CRA_TCAGchr7.v1:61290393-61430440	61290393	61430440	AC104789.4:1-140048\|+	1	140048	+	140048		NCBI_chr7_b31:60854234-60994281	60854234	60994281	AC104789.4:1-140048\|+	1	140048	+	140048		140048	140048/140048 (100%)	0/140048 (0%)
CRA_TCAGchr7.v1:61430441-61567886	61430441	61565886	AC092585.2:1-137446\|+	1	135446	+	135446		NCBI_chr7_b31:60994282-61129727	60994282