The Chromosome 7 Annotation Project
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Celera Scaffolds
CRA_TCAGchr7.v1 Assembly Components BAC Clones
Centromere
Physical Gaps
Component Number Chr. 7 Start Coordinate Chr. 7 End Coordinate Component Id (BAC Clone/Celera Scaffold) Component Start Coordinate Component End Coordinate Orientation Component Length No. of Gaps Total Size of Gaps
1 1 1,120 AC099546.2 1 1,120 + 1,120    
2 1,121 51,120 50kN 1 50,000 + 50,000 1 50,000
3 51,121 96,590 AC097647.2 1 45,470 + 45,470    
4 96,591 105,103 AC112517.1 33,129 41,641 + 8,513    
5 105,104 114,912 AC097645.2 31,764 41,572 + 9,809    
6 114,913 127,224 AC097646.2 30,650 42,961 + 12,312    
7 127,225 157,442 AC093686.6 3,821 34,038 + 30,218    
8 157,443 170,367 AC093666.4 1 12,925 + 12,925    
9 170,368 177,612 AC093627.4 1 7,245 + 7,245    
10 177,613 656,460 GA_x39G1GC42LN_4 1 478,848 + 478,848 25 74,891
11 656,461 706,460 50kN 1 50,000 + 50,000 1 50,000
12 706,461 1,189,758 GA_x39G1FKSFPU_4 1 483,298 + 483,298 5 7,515
13 1,189,759 4,656,132 GA_x5HB7VCL7H0_3 3,805 3,470,178 + 3,466,374 4 716
14 4,656,133 4,808,169 AC072054.10 1 152,037 + 152,037    
15 4,808,170 4,847,992 AC092428.4 1 39,823 + 39,823    
16 4,847,993 5,008,010 AC092610.1 1 160,018 + 160,018    
17 5,008,011 5,030,248 AC053546.8 1 22,238 + 22,238    
18 5,030,249 5,206,646 AC092032.5 1 176,398 + 176,398    
19 5,206,647 5,282,813 AC092028.4 2,001 78,167 + 76,167    
20 5,282,814 5,456,975 AC093376.5 2,001 176,162 + 174,162    
21 5,456,976 5,526,158 AC093620.3 2,001 71,183 + 69,183    
22 5,526,159 5,609,290 AC092171.4 2,001 85,132 + 83,132    
23 5,609,291 5,803,697 AC006483.3 1 194,407 - 194,407    
24 5,803,698 5,944,060 AC008167.5 1 140,363 - 140,363    
25 5,944,061 6,066,881 AC004983.2 2,001 124,821 + 122,821    
26 6,066,882 6,146,691 AC005995.3 1 79,810 - 79,810    
27 6,146,692 6,806,357 GA_x5HB7VCL73F_3 56,781 716,446 + 659,666 4 2,239
28 6,806,358 6,892,575 AC073343.6 87,750 173,967 + 86,218    
29 6,892,576 6,950,002 AC079882.6 2,001 59,427 + 57,427    
30 6,950,003 7,102,375 AC079804.5 2,001 154,373 + 152,373    
31 7,102,376 29,799,627 GA_x5HB7VCL79P_4 1 22,697,252 - 22,697,252 11 15,124
32 29,799,628 29,859,417 AC007276.3 39,110 98,899 + 59,790    
33 29,859,418 32,673,246 GA_x5HB7VCL779_3 133,858 2,947,686 - 2,813,829 0 0
34 32,673,247 32,842,480 AC018633.2 1 169,234 + 169,234    
35 32,842,481 32,927,451 AC018645.4 24,644 109,614 + 84,971    
36 32,927,452 35,043,431 GA_x5HB7VCL78J_3 1 2,115,980 + 2,115,980 1 3,254
37 35,043,432 35,073,644 AC004711.1 11,369 41,581 + 30,213    
38 35,073,645 35,184,293 AC010085.3 5,624 116,272 - 110,649    
39 35,184,294 35,359,268 AC006379.2 201 175,175 + 174,975    
40 35,359,269 44,080,811 GA_x5HB7VCL77B_3 1 8,721,543 + 8,721,543 5 20,715
41 44,080,812 44,083,066 AC004985.2 1 2,255 - 2,255    
42 44,083,067 44,134,859 AC004951.5 1 51,793 - 51,793    
43 44,134,860 44,159,323 AC017116.7 2,001 26,464 + 24,464    
44 44,159,324 45,843,882 GA_x5HB7VCL761_3 1 1,684,559 - 1,684,559 2 48
45 45,843,883 45,870,425 AC091439.5 77,233 103,775 + 26,543    
46 45,870,426 45,975,559 AC096582.1 2,001 107,134 + 105,134    
47 45,975,560 48,208,174 GA_x5HB7VCL7FH_6 1 2,232,615 + 2,232,615 2 120
48 48,208,175 51,673,296 GA_x54KREB6MY7_6 1 3,465,122 - 3,465,122 8 12,468
49 51,673,297 53,217,371 GA_x54KREB72W2_6 12,762 1,556,836 + 1,544,075 1 2,200
50 53,217,372 53,379,831 AC073318.8 1 162,460 + 162,460    
51 53,379,832 55,765,198 GA_x54KREB72Y9_3 67,820 2,453,186 + 2,385,367 2 40
52 55,765,199 55,819,489 AC073237.3 1 54,291 + 54,291    
53 55,819,490 55,915,276 AC099681.4 2,001 97,787 + 95,787    
54 55,915,277 56,036,240 AC091812.4 1,980 122,943 + 120,964    
55 56,036,241 56,198,131 AC092647.2 2,001 163,891 + 161,891    
56 56,198,132 56,315,089 AC092579.3 2,001 118,958 + 116,958    
57 56,315,090 56,351,964 AC092101.5 2,001 38,875 + 36,875    
58 56,351,965 56,486,071 AC006970.6 1,992 136,098 + 134,107    
59 56,486,072 56,566,667 AC073136.6 201 80,796 + 80,596    
60 56,566,668 56,664,264 AC093392.4 2,001 99,597 + 97,597    
61 56,664,265 56,687,199 AC092423.5 2,001 24,935 + 22,935    
62 56,687,200 56,861,746 AC092447.5 2,001 176,547 + 174,547    
63 56,861,747 57,152,262 GA_x5HB7VC7SFH_3 95,227 385,742 + 290,516 0 0
64 57,152,263 57,175,518 AC118758.3 127,558 150,813 + 23,256    
65 57,175,519 57,308,614 AC069152.5 1 133,096 - 133,096    
66 57,308,615 57,384,445 AC122133.4 115,273 191,103 + 75,831    
67 57,384,446 57,386,833 AC125231.2 2,001 4,388 + 2,388    
68 57,386,834 57,534,090 AC099654.4 1 147,257 + 147,257    
69 57,534,091 57,712,195 AC073057.6 1 178,105 + 178,105    
70 57,712,196 57,810,840 AC092175.5 2,001 100,645 + 98,645    
71 57,810,841 57,953,804 AC064862.6 1 142,964 - 142,964    
72 57,953,805 57,955,798 AC103878.4 2,001 3,994 + 1,994    
73 57,955,799 58,151,435 AC023141.6 2,001 197,637 + 195,637    
74 58,151,436 58,344,712 AC017075.8 1 193,277 + 193,277    
75 58,344,713 61,044,712 2700kN 1 2,700,000 + 2,700,000 1 2,700,000
76 61,044,713 61,229,994 AC019063.4 2,001 187,282 - 185,282    
77 61,229,995 61,266,885 AC110784.3 1 36,891 + 36,891    
78 61,266,886 61,290,392 AC118943.2 1 23,507 + 23,507    
79 61,290,393 61,430,440 AC104789.4 1 140,048 + 140,048    
80 61,430,441 61,567,886 AC092585.2 1 137,446 + 137,446    
81 61,567,887 61,741,840 AC069285.8 1,999 175,952 + 173,954    
82 61,741,841 61,766,196 AC092001.4 2,001 26,356 + 24,356    
83 61,766,197 61,903,580 AC006455.2 2,001 139,384 + 137,384    
84 61,903,581 61,966,708 AC073188.10 2,001 65,128 + 63,128    
85 61,966,709 62,098,896 AC006457.4 2,000 134,187 + 132,188    
86 62,098,897 62,211,113 AC006015.5 201 112,417 + 112,217    
87 62,211,114 62,349,354 AC079355.6 2,001 140,241 + 138,241    
88 62,349,355 62,541,499 AC092634.3 1,998 194,142 + 192,145    
89 62,541,500 62,655,415 AC115220.1 2,001 115,916 + 113,916    
90 62,655,416 62,721,714 AC091685.4 2,001 68,299 + 66,299    
91 62,721,715 62,758,151 AC104094.4 2,001 38,437 + 36,437    
92 62,758,152 62,944,830 AC073270.6 2,001 188,679 + 186,679    
93 62,944,831 63,039,727 AC022202.12 201 95,097 + 94,897    
94 63,039,728 63,243,099 AC016769.10 201 203,572 + 203,372    
95 63,243,100 63,289,779 AC091799.5 2,001 48,680 + 46,680    
96 63,289,780 63,428,640 AC073349.11 2,001 140,861 + 138,861    
97 63,428,641 63,474,451 AC092161.3 2,001 47,811 + 45,811    
98 63,474,452 63,675,847 AC073210.8 2,001 203,396 + 201,396    
99 63,675,848 63,852,517 AC104073.3 2,001 178,670 + 176,670    
100 63,852,518 63,949,798 AC092685.2 85,983 183,263 + 97,281    
101 63,949,799 64,082,137 AC114501.1 2,001 134,339 + 132,339    
102 64,082,138 64,083,572 AC104092.4 2,000 3,434 + 1,435    
103 64,083,573 64,163,915 AC104057.4 1 80,343 + 80,343    
104 64,163,916 64,356,092 AC073107.7 1 192,177 + 192,177    
105 64,356,093 64,447,316 AC093582.3 1 91,224 + 91,224    
106 64,447,317 64,464,514 AC093485.4 2,001 19,198 + 17,198    
107 64,464,515 64,555,917 AC073261.8 2,001 93,403 + 91,403    
108 64,555,918 65,220,597 GA_x5HB7VC11UB_3 434,098 1,098,777 - 664,680 1 654
109 65,220,598 65,408,804 AC027644.9 1 188,207 - 188,207    
110 65,408,805 65,475,079 AC073335.5 2,001 68,275 + 66,275    
111 65,475,080 65,603,363 AC079920.6 2,001 130,284 + 128,284    
112 65,603,364 65,773,151 AC073089.5 2,001 171,788 + 169,788    
113 65,773,152 65,930,903 AC006480.3 2,001 159,752 + 157,752    
114 65,930,904 71,002,633 GA_x5L2HTUEKN6_3 98,299 5,170,028 + 5,071,730 7 401
115 71,002,634 71,135,388 AC092536.3 1 132,755 + 132,755    
116 71,135,389 71,265,316 AC091738.4 2,001 131,928 + 129,928    
117 71,265,317 71,297,325 AC105447.4 2,001 34,009 + 32,009    
118 71,297,326 71,309,187 AC114816.4 2,001 13,862 + 11,862    
119 71,309,188 71,314,261 AC114731.3 1 5,074 + 5,074    
120 71,314,262 71,399,854 AC005236.4 2,001 87,593 + 85,593    
121 71,399,855 71,585,391 AC005488.2 201 185,737 + 185,537    
122 71,585,392 71,756,092 AC006995.5 1 170,701 - 170,701    
123 71,756,093 71,811,480 AC073841.9 1 55,388 - 55,388    
124 71,811,481 71,918,208 AC005049.2 1 106,728 - 106,728    
125 71,918,209 71,968,612 AC005074.1 1 50,404 - 50,404    
126 71,968,613 72,127,431 AC005089.3 1 158,819 - 158,819    
127 72,127,432 72,248,435 AC073846.6 1 121,004 - 121,004    
128 72,248,436 72,395,124 AC093168.3 2,001 148,689 + 146,689    
129 72,395,125 72,479,435 AC099398.5 2,001 86,311 + 84,311    
130 72,479,436 72,574,982 AC005056.2 652 96,198 - 95,547    
131 72,574,983 72,674,352 AC005057.2 1 99,370 - 99,370    
132 72,674,353 72,766,893 AC005081.3 87,550 180,090 - 92,541    
133 72,766,894 72,986,828 AC005015.2 1 219,935 - 219,935    
134 72,986,829 73,058,255 AC004851.2 1 71,427 - 71,427    
135 73,058,256 73,157,036 AC005231.3 3,132 101,912 - 98,781    
136 73,157,037 73,326,640 AC083884.6 1 169,604 + 169,604    
137 73,326,641 73,448,244 AC004867.5 1 121,604 - 121,604    
138 73,448,245 73,494,600 AC004166.12 228,842 275,197 + 46,356    
139 73,494,601 73,495,600 1kN 1 1,000 + 1,000 1 1,000
140 73,495,601 73,726,152 AC005098.2 1 230,552   230,552    
141 73,726,153 73,727,152 1kN 1 1,000 + 1,000 1 1,000
142 73,727,153 73,814,185 AC118138.2 1 87,033 + 87,033    
143 73,814,186 73,908,215 AC004878.3 16,655 110,684 - 94,030    
144 73,908,216 74,035,974 AC006014.2 1 127,759 + 127,759    
145 74,035,975 74,170,753 AC018720.5 1 134,779 - 134,779    
146 74,170,754 74,346,392 AC004491.1 201 175,839 + 175,639    
147 74,346,393 74,351,609 AC006025.2 1 5,217 - 5,217    
148 74,351,610 74,457,917 AC005102.1 1 106,308 - 106,308    
149 74,457,918 74,547,165 AC005067.2 1 89,248 - 89,248    
150 74,547,166 74,643,264 AC006330.5 1 96,099 - 96,099    
151 74,643,265 74,883,443 AC005077.5 1 240,179 - 240,179    
152 74,883,444 74,942,484 AC006388.3 1 59,041 - 59,041    
153 74,942,485 75,091,889 AC005522.2 1 149,405 - 149,405    
154 75,091,890 75,106,164 AC007078.4 1 14,275 - 14,275    
155 75,106,165 75,313,458 AC004980.5 1,499 208,792 + 207,294    
156 75,313,459 75,484,995 AC006972.2 1 171,537 + 171,537    
157 75,484,996 75,518,882 AC007003.5 201 34,087 + 33,887    
158 75,518,883 75,614,109 AC114737.3 2,001 97,227 + 95,227    
159 75,614,110 75,810,769 AC007000.2 1 196,660 + 196,660    
160 75,810,770 75,869,115 AC098851.5 103,125 161,470 + 58,346    
161 75,869,116 75,944,742 AC073635.8 55,196 130,822 + 75,627    
162 75,944,743 76,094,874 AC004921.1 1 150,132 - 150,132    
163 76,094,875 76,240,640 AC006451.5 201 145,966 + 145,766    
164 76,240,641 76,283,835 AC090421.5 2,001 45,195 + 43,195    
165 76,283,836 76,402,392 AC004955.3 2,001 120,557 + 118,557    
166 76,402,393 76,487,411 AC073520.6 201 85,219 + 85,019    
167 76,487,412 96,426,521 GA_x5L2HTUMHYR_3 28,900 19,968,009 - 19,939,110 7 15,767
168 96,426,522 96,524,077 AC079781.7 1 97,556 + 97,556    
169 96,524,078 96,537,266 AC004967.3 2,001 15,189 + 13,189    
170 96,537,267 99,246,376 GA_x5L2HTUMHW3_6 294,676 3,003,785 - 2,709,110 5 4,354
171 99,246,377 99,345,052 AC009488.5 1 98,676 + 98,676    
172 99,345,053 99,517,409 AC011895.4 1 172,357 + 172,357    
173 99,517,410 99,547,605 AC118759.3 1 30,196 + 30,196    
174 99,547,606 99,597,605 50kN 1 50,000 + 50,000 1 50,000
175 99,597,606 99,737,122 AC105446.4 1 139,517 + 139,517    
176 99,737,123 99,740,808 AC112241.3 2,001 5,686 + 3,686    
177 99,740,809 99,865,268 AC004876.2 2,003 126,462 + 124,460    
178 99,865,269 99,865,767 AC007008.3 201 699 + 499    
179 99,865,768 100,010,820 AC006329.5 201 145,253 + 145,053    
180 100,010,821 100,181,378 AC004965.2 201 170,758 + 170,558    
181 100,181,379 100,327,585 AC004953.2 201 146,407 + 146,207    
182 100,327,586 100,512,761 AC005096.4 201 185,376 + 185,176    
183 100,512,762 100,553,305 AC092788.3 2,001 42,544 + 40,544    
184 100,553,306 100,620,672 AC005072.2 2,001 69,367 + 67,367    
185 100,620,673 100,769,285 AF047825.1 1 148,613 - 148,613 2 2
186 100,769,286 100,839,186 AC005086.2 59,686 129,586 + 69,901    
187 100,839,187 100,902,969 AC005088.2 201 63,983 + 63,783    
188 100,902,970 101,019,978 AC091390.1 3,158 120,166 - 117,009    
189 101,019,979 101,178,332 AC093668.4 1 158,354 + 158,354    
190 101,178,333 101,220,255 AC004084.1 51,351 93,273 - 41,923    
191 101,220,256 101,344,337 AC105052.3 1 124,082 + 124,082    
192 101,344,338 101,465,857 AC006477.4 1 121,520 + 121,520    
193 101,465,858 101,559,993 AC005250.1 201 94,336 + 94,136    
194 101,559,994 101,713,835 AC073127.11 2,001 155,842 + 153,842    
195 101,713,836 101,722,555 AC108167.3 2,001 10,720 + 8,720    
196 101,722,556 101,876,290 AC007683.5 1 153,735 - 153,735    
197 101,876,291 101,988,751 AC004668.1 1 112,461 - 112,461    
198 101,988,752 102,037,917 AC093701.4 2,001 51,166 + 49,166    
199 102,037,918 126,983,441 GA_x54KREB2RL0_6 133,042 25,078,565 - 24,945,524 15 18,046
200 126,983,442 127,148,531 AC010655.7 1 165,090 + 165,090    
201 127,148,532 127,238,253 AC090114.5 2,001 91,722 + 89,722    
202 127,238,254 127,379,569 AC093183.3 32,818 174,133 + 141,316    
203 127,379,570 140,750,156 GA_x54KREB3J6B_4 4,089 13,374,675 - 13,370,587 16 26,526
204 140,750,157 140,919,524 AC091742.5 1 169,368 + 169,368    
205 140,919,525 141,186,680 U66059.1 1 267,156 + 267,156    
206 141,186,681 141,392,464 U66060.1 9,639 215,422 + 205,784    
207 141,392,465 141,604,497 U66061.1 20,618 232,650 + 212,033    
208 141,604,498 142,871,475 GA_x54KREB44CJ_5 806,657 2,073,634 + 1,266,978 3 592
209 142,871,476 142,970,821 AC004889.1 30,685 130,030 + 99,346    
210 142,970,822 143,027,366 AC074386.6 10,066 66,610 - 56,545    
211 143,027,367 148,558,089 GA_x54KREB449V_4 1 5,530,723 + 5,530,723 2 437
212 148,558,090 148,699,621 AC092681.3 7,287 148,818 + 141,532    
213 148,699,622 148,834,555 AC092666.2 2,001 136,934 + 134,934    
214 148,834,556 148,859,477 AC099647.5 2,001 26,922 + 24,922    
215 148,859,478 148,915,031 AC006008.2 1 55,554 - 55,554    
216 148,915,032 148,957,331 AC005586.2 89,651 131,950 - 42,300    
217 148,957,332 150,326,678 GA_x54KREB44AV_3 1 1,369,347 + 1,369,347 1 790
218 150,326,679 150,421,442 AC006358.6 1 94,764 - 94,764    
219 150,421,443 150,597,913 AC093583.3 2,001 178,471 + 176,471    
220 150,597,914 150,651,619 AC074257.5 132,342 186,047 + 53,706    
221 150,651,620 150,665,772 AC099345.3 2,001 16,153 + 14,153    
222 150,665,773 150,826,328 AC006017.2 2,001 162,556 + 160,556    
223 150,826,329 150,895,846 AC006474.3 201 69,718 + 69,518    
224 150,895,847 151,042,452 AC104692.1 2,001 148,606 + 146,606    
225 151,042,453 151,184,225 AC005631.4 1 141,773 - 141,773    
226 151,184,226 151,308,851 AC104843.3 2,001 126,626 + 124,626    
227 151,308,852 151,334,724 AC003109.1 1 25,873 - 25,873    
228 151,334,725 151,418,005 AC092180.5 1,995 85,275 + 83,281    
229 151,418,006 151,556,155 AC072057.8 1 138,150 - 138,150    
230 151,556,156 151,691,838 AC006348.3 1 135,683 - 135,683    
231 151,691,839 152,120,511 GA_x5HB7VC9F37_3 275,971 704,643 + 428,673 1 20
232 152,120,512 152,139,608 AC091744.5 3,936 23,032 + 19,097    
233 152,139,609 152,356,339 AC092033.4 2,001 218,731 + 216,731    
234 152,356,340 152,452,722 AC005998.3 1 96,383 - 96,383    
235 152,452,723 152,523,002 AC006973.2 1 70,280 - 70,280    
236 152,523,003 152,642,285 AC005588.1 1 119,283 - 119,283    
237 152,642,286 152,766,700 AC006019.2 1 124,415 - 124,415    
238 152,766,701 152,919,365 AC104594.2 2,001 154,665 + 152,665    
239 152,919,366 152,969,304 AC099341.4 2,001 51,939 + 49,939    
240 152,969,305 153,955,934 GA_x5J8B7Q6JNY_6 155,406 1,142,035 + 986,630 3 3,689
241 153,955,935 154,005,934 50kN 1 50,000 + 50,000 1 50,000
242 154,005,935 157,953,789 GA_x5J8B7Q6WBE_6 1 3,947,855 + 3,947,855 7 8,078